Wall clock time and date at job start Mon Mar 30 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.45407 * 2 1 4 4 C 1.54477 * 110.51500 * 122.60474 * 2 1 3 5 5 O 1.44428 * 104.80172 * 94.66484 * 4 2 1 6 6 C 1.44423 * 105.27200 * 40.51401 * 5 4 2 7 7 H 1.09003 * 110.37342 * 78.43127 * 6 5 4 8 8 C 1.50702 * 110.36823 * 200.65556 * 6 5 4 9 9 H 1.08002 * 120.00299 * 117.05381 * 8 6 5 10 10 C 1.37884 * 119.99942 * 296.76939 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.54475 * 104.90371 * 319.53872 * 6 5 4 17 17 H 1.08997 * 110.51469 * 265.27921 * 16 6 5 18 18 O 1.42898 * 110.51081 * 142.57019 * 16 6 5 19 19 H 1.09000 * 109.46998 * 298.84451 * 1 2 3 20 20 H 1.08998 * 109.47434 * 58.85080 * 1 2 3 21 21 H 1.09004 * 109.47140 * 178.85126 * 1 2 3 22 22 H 1.08999 * 109.46627 * 181.15504 * 3 2 1 23 23 H 1.08998 * 109.46852 * 301.14910 * 3 2 1 24 24 H 1.08999 * 109.47063 * 61.15351 * 3 2 1 25 25 H 1.09004 * 110.37022 * 335.83524 * 4 2 1 26 26 H 1.08997 * 110.46458 * 213.54271 * 4 2 1 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 0.96693 * 114.00358 * 61.45591 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0714 -0.7796 1.2188 5 8 2.3070 -2.1168 0.7265 6 6 2.8757 -1.9428 -0.5896 7 1 3.9306 -1.6787 -0.5153 8 6 2.7067 -3.1994 -1.4043 9 1 2.1095 -3.1834 -2.3041 10 6 3.3191 -4.3681 -1.0041 11 7 4.0463 -4.3876 0.0915 12 14 3.1159 -5.9236 -2.0181 13 1 4.1967 -5.9972 -3.0338 14 1 3.1927 -7.1090 -1.1269 15 1 1.7967 -5.9015 -2.6997 16 6 2.0737 -0.7822 -1.2188 17 1 1.2520 -1.1684 -1.8218 18 8 2.9288 0.0472 -2.0081 19 1 -0.3633 0.4958 0.9002 20 1 -0.3634 0.5316 -0.8795 21 1 -0.3633 -1.0275 -0.0206 22 1 3.1543 1.4149 -0.0207 23 1 1.6936 1.9597 -0.8795 24 1 1.7271 1.9473 0.9001 25 1 1.3311 -0.7947 2.0188 26 1 3.0021 -0.3359 1.5722 27 1 4.4769 -5.2099 0.3733 28 1 3.3446 -0.4109 -2.7511 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183938.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:27 Heat of formation + Delta-G solvation = -131.077560 kcal Electronic energy + Delta-G solvation = -12138.702312 eV Core-core repulsion = 9960.343351 eV Total energy + Delta-G solvation = -2178.358961 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.68863 -36.76245 -35.32869 -34.25929 -30.29757 -28.14456 -26.85520 -26.29668 -22.81589 -20.17037 -18.92071 -17.89964 -16.76990 -16.19405 -15.97075 -15.84022 -15.11721 -14.28638 -14.03245 -13.93510 -13.27467 -12.99331 -12.86151 -12.80215 -12.73271 -12.27634 -12.04748 -11.66463 -11.48785 -11.05345 -10.76094 -10.61019 -10.02205 -8.21893 -6.44947 1.39610 1.41647 1.52629 2.36918 2.97904 3.35230 3.59534 3.89696 4.06084 4.20856 4.43598 4.51105 4.64213 4.80249 4.82535 4.85962 5.01213 5.10115 5.16557 5.31830 5.36008 5.53792 5.64298 6.01627 6.42641 6.77501 6.93359 7.31875 8.87033 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058953 B = 0.012921 C = 0.012259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.842338 B = 2166.413977 C = 2283.516271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.110 4.110 4 C 0.038 3.962 5 O -0.390 6.390 6 C 0.177 3.823 7 H -0.007 1.007 8 C -0.557 4.557 9 H 0.071 0.929 10 C 0.020 3.980 11 N -0.904 5.904 12 Si 0.970 3.030 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.091 3.909 17 H 0.057 0.943 18 O -0.566 6.566 19 H 0.080 0.920 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 7.497 -1.766 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.098 4.098 3 C -0.167 4.167 4 C -0.040 4.040 5 O -0.310 6.310 6 C 0.121 3.879 7 H 0.011 0.989 8 C -0.594 4.594 9 H 0.089 0.911 10 C -0.182 4.182 11 N -0.541 5.541 12 Si 0.793 3.207 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.187 1.187 16 C 0.032 3.968 17 H 0.075 0.925 18 O -0.373 6.373 19 H 0.099 0.901 20 H 0.086 0.914 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.209 7.649 -1.108 9.320 hybrid contribution 0.550 -1.287 -0.671 1.552 sum -4.659 6.362 -1.779 8.084 Atomic orbital electron populations 1.21738 0.91748 1.01664 1.03088 1.22037 0.97516 0.96815 0.93383 1.21416 1.00209 0.93114 1.01993 1.23578 0.98930 0.84837 0.96607 1.89395 1.82968 1.24533 1.34090 1.21125 0.91404 0.94348 0.81061 0.98931 1.21447 1.33027 0.95618 1.09348 0.91140 1.26062 0.93510 1.02883 0.95765 1.70192 1.31485 1.28536 1.23921 0.85403 0.79194 0.77779 0.78312 1.19139 1.20896 1.18673 1.23280 0.91841 0.89611 0.92103 0.92491 1.86309 1.65140 1.40039 1.45816 0.90148 0.91411 0.93687 0.94009 0.91900 0.91039 0.88734 0.94339 0.92729 0.76518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 8.29 71.98 0.60 -3.16 15 2 C -0.10 -3.54 1.06 -51.10 -0.05 -3.60 15 3 C -0.11 -3.41 7.54 71.98 0.54 -2.86 15 4 C 0.04 1.58 6.73 72.48 0.49 2.07 15 5 O -0.39 -21.51 10.96 -148.98 -1.63 -23.15 15 6 C 0.18 9.52 2.82 30.35 0.09 9.60 15 7 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 15 8 C -0.56 -31.60 8.77 25.60 0.22 -31.38 15 9 H 0.07 3.77 7.58 -2.91 -0.02 3.75 15 10 C 0.02 1.15 5.43 84.66 0.46 1.61 15 11 N -0.90 -55.56 13.00 21.45 0.28 -55.28 15 12 Si 0.97 43.82 29.54 68.60 2.03 45.85 15 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 16 C 0.09 3.90 3.65 31.67 0.12 4.01 15 17 H 0.06 2.45 7.31 -2.39 -0.02 2.44 15 18 O -0.57 -21.91 11.64 -148.98 -1.73 -23.64 15 19 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.04 1.42 7.76 -2.39 -0.02 1.40 15 23 H 0.06 1.83 8.05 -2.39 -0.02 1.81 15 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.09 3.40 7.87 -2.38 -0.02 3.39 15 26 H 0.04 1.60 7.87 -2.39 -0.02 1.58 15 27 H 0.26 15.19 8.31 -92.70 -0.77 14.42 15 28 H 0.39 12.94 9.11 -74.06 -0.67 12.27 15 Total: -1.00 -67.49 235.28 1.86 -65.63 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.46 Total: 14.30 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 2.46 Total: -23.71 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.28 Total: -55.28 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -3.37 Total: -46.79 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.49 1.86 -65.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183938.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.447 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds