Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 110.45646 * 2 1 4 4 C 1.54479 * 110.51034 * 237.39338 * 2 1 3 5 5 O 1.44648 * 104.69342 * 217.48010 * 4 2 1 6 6 C 1.44425 * 105.37326 * 40.34209 * 5 4 2 7 7 H 1.09003 * 110.45792 * 78.44512 * 6 5 4 8 8 C 1.50697 * 110.37564 * 200.73370 * 6 5 4 9 9 H 1.08001 * 119.99975 * 115.38179 * 8 6 5 10 10 C 1.37879 * 120.00157 * 295.38581 * 8 6 5 11 11 N 1.31519 * 119.99748 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00029 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46824 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46994 * 119.99789 * 12 10 8 15 15 H 1.48500 * 109.47047 * 240.00221 * 12 10 8 16 16 C 1.54483 * 104.80378 * 319.57121 * 6 5 4 17 17 H 1.08995 * 110.51022 * 142.62080 * 16 6 5 18 18 O 1.42898 * 110.50948 * 265.33181 * 16 6 5 19 19 H 1.09001 * 109.47002 * 59.29862 * 1 2 3 20 20 H 1.08993 * 109.46955 * 179.30299 * 1 2 3 21 21 H 1.09000 * 109.47050 * 299.30128 * 1 2 3 22 22 H 1.08998 * 109.47048 * 60.70234 * 3 2 1 23 23 H 1.08999 * 109.46543 * 180.70110 * 3 2 1 24 24 H 1.08997 * 109.47165 * 300.69572 * 3 2 1 25 25 H 1.09002 * 110.37222 * 336.20473 * 4 2 1 26 26 H 1.08993 * 110.37215 * 98.54970 * 4 2 1 27 27 H 0.96997 * 119.99576 * 179.97438 * 11 10 8 28 28 H 0.96710 * 113.99581 * 294.64613 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0713 -0.7797 -1.2188 5 8 3.2398 -1.4724 -0.7218 6 6 2.8757 -1.9414 0.5947 7 1 2.2569 -2.8359 0.5229 8 6 4.1105 -2.2232 1.4114 9 1 4.3181 -1.6388 2.2956 10 6 4.9752 -3.2270 1.0298 11 7 4.7222 -3.9390 -0.0466 12 14 6.5062 -3.5758 2.0418 13 1 6.5600 -2.6425 3.1956 14 1 6.4630 -4.9744 2.5388 15 1 7.7121 -3.3879 1.1959 16 6 2.0713 -0.7797 1.2192 17 1 1.2490 -1.1652 1.8218 18 8 2.9242 0.0528 2.0075 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3633 -1.0275 -0.0125 21 1 -0.3633 0.5029 0.8962 22 1 1.7206 1.9497 0.8962 23 1 3.1546 1.4147 -0.0126 24 1 1.7003 1.9573 -0.8836 25 1 1.3286 -1.4950 -1.5720 26 1 2.3465 -0.0913 -2.0178 27 1 5.3307 -4.6449 -0.3152 28 1 3.2922 -0.3867 2.7864 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183952.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = -125.536352 kcal Electronic energy + Delta-G solvation = -12210.018520 eV Core-core repulsion = 10031.899843 eV Total energy + Delta-G solvation = -2178.118677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.67276 -36.57367 -35.38723 -34.18123 -30.11092 -28.11436 -26.98581 -26.36022 -22.66283 -20.09104 -18.69019 -18.05582 -16.98701 -16.28533 -16.14162 -15.59270 -14.67020 -14.34560 -14.09460 -13.74568 -13.41491 -12.96484 -12.86135 -12.80018 -12.51525 -12.07682 -11.99636 -11.55704 -11.43638 -11.19781 -10.75172 -10.49808 -9.91596 -8.18845 -6.38406 1.40479 1.42656 1.54698 2.39420 3.04403 3.42906 3.60797 3.87505 4.16274 4.25123 4.43020 4.54272 4.60452 4.79915 4.83702 4.87185 5.03262 5.11741 5.17747 5.27496 5.36738 5.57770 5.71410 6.07368 6.49528 6.76644 7.09360 7.36888 8.91218 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062235 B = 0.013546 C = 0.012306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.803162 B = 2066.584705 C = 2274.833561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.106 4.106 4 C 0.036 3.964 5 O -0.395 6.395 6 C 0.169 3.831 7 H -0.004 1.004 8 C -0.545 4.545 9 H 0.082 0.918 10 C 0.016 3.984 11 N -0.910 5.910 12 Si 0.969 3.031 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.286 1.286 16 C 0.088 3.912 17 H 0.063 0.937 18 O -0.561 6.561 19 H 0.079 0.921 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.261 0.739 28 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 6.789 1.985 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.041 4.041 5 O -0.315 6.315 6 C 0.113 3.887 7 H 0.014 0.986 8 C -0.582 4.582 9 H 0.099 0.901 10 C -0.186 4.186 11 N -0.548 5.548 12 Si 0.793 3.207 13 H -0.179 1.179 14 H -0.202 1.202 15 H -0.212 1.212 16 C 0.029 3.971 17 H 0.081 0.919 18 O -0.369 6.369 19 H 0.098 0.902 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.574 7.056 1.324 9.734 hybrid contribution 0.868 -1.070 0.604 1.504 sum -5.706 5.986 1.927 8.492 Atomic orbital electron populations 1.21772 0.91187 1.02187 1.03325 1.22056 0.97330 0.96996 0.93138 1.21362 0.99975 0.93424 1.01599 1.23630 0.89299 0.94711 0.96489 1.89426 1.34616 1.73207 1.34217 1.21125 0.95116 0.91209 0.81228 0.98642 1.21434 1.09102 1.17022 1.10656 0.90051 1.26053 1.01469 0.95195 0.95852 1.70200 1.38072 1.21207 1.25289 0.85358 0.78318 0.78274 0.78736 1.17866 1.20156 1.21209 1.23168 0.91105 0.90597 0.92230 0.91934 1.86344 1.67182 1.41205 1.42156 0.90213 0.92739 0.91257 0.92059 0.94870 0.91309 0.93455 0.89504 0.92981 0.76909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.29 71.98 0.60 -2.83 15 2 C -0.09 -3.41 1.05 -51.16 -0.05 -3.47 15 3 C -0.11 -3.54 7.52 71.98 0.54 -2.99 15 4 C 0.04 1.50 6.76 72.48 0.49 1.99 15 5 O -0.40 -22.02 11.05 -148.98 -1.65 -23.67 15 6 C 0.17 9.05 3.04 30.35 0.09 9.14 15 7 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 8 C -0.55 -30.63 8.42 25.60 0.22 -30.41 15 9 H 0.08 4.21 5.56 -2.91 -0.02 4.19 15 10 C 0.02 0.90 5.43 84.65 0.46 1.35 15 11 N -0.91 -56.15 13.07 21.45 0.28 -55.87 15 12 Si 0.97 44.22 29.54 68.60 2.03 46.25 15 13 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 15 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 16 C 0.09 3.73 3.98 31.61 0.13 3.86 15 17 H 0.06 2.40 7.73 -2.39 -0.02 2.38 15 18 O -0.56 -23.33 10.98 -148.98 -1.64 -24.96 15 19 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.05 1.47 8.12 -2.39 -0.02 1.45 15 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.06 1.90 7.99 -2.39 -0.02 1.88 15 23 H 0.03 1.29 7.83 -2.39 -0.02 1.27 15 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.05 1.86 7.85 -2.39 -0.02 1.84 15 26 H 0.09 3.23 7.87 -2.39 -0.02 3.21 15 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15 28 H 0.38 14.36 7.03 -74.05 -0.52 13.84 15 Total: -1.00 -68.29 231.31 2.12 -66.17 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.62 Total: 15.44 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 2.47 Total: -23.36 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -3.28 Total: -48.63 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.29 2.12 -66.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183952.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.365 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds