Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.45411 * 2 1 4 4 C 1.54485 * 110.51328 * 122.60336 * 2 1 3 5 5 O 1.44424 * 104.79904 * 142.62526 * 4 2 1 6 6 C 1.44424 * 105.27845 * 319.49112 * 5 4 2 7 7 H 1.09001 * 110.37102 * 281.57457 * 6 5 4 8 8 C 1.50694 * 110.37446 * 159.34371 * 6 5 4 9 9 H 1.08000 * 120.00563 * 241.45228 * 8 6 5 10 10 C 1.37885 * 119.99902 * 61.45392 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.54475 * 104.80207 * 40.51113 * 6 5 4 17 17 H 1.09006 * 110.51334 * 94.67287 * 16 6 5 18 18 O 1.42902 * 110.51219 * 217.37919 * 16 6 5 19 19 H 1.09007 * 109.46867 * 298.84730 * 1 2 3 20 20 H 1.08994 * 109.47430 * 58.84883 * 1 2 3 21 21 H 1.09001 * 109.46483 * 178.84849 * 1 2 3 22 22 H 1.09004 * 109.47339 * 181.14926 * 3 2 1 23 23 H 1.08994 * 109.47498 * 301.15389 * 3 2 1 24 24 H 1.09004 * 109.47425 * 61.15269 * 3 2 1 25 25 H 1.08995 * 110.36837 * 23.79246 * 4 2 1 26 26 H 1.08996 * 110.37409 * 261.45612 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 28 28 H 0.96699 * 113.99885 * 298.54736 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0714 -0.7796 1.2189 5 8 3.2399 -1.4703 0.7257 6 6 2.8759 -1.9428 -0.5896 7 1 2.2581 -2.8376 -0.5138 8 6 4.1106 -2.2265 -1.4056 9 1 4.2920 -1.6793 -2.3189 10 6 5.0090 -3.1848 -0.9862 11 7 4.7884 -3.8508 0.1262 12 14 6.5392 -3.5369 -1.9980 13 1 7.3362 -4.6010 -1.3362 14 1 6.1418 -3.9876 -3.3560 15 1 7.3564 -2.3017 -2.1058 16 6 2.0715 -0.7828 -1.2170 17 1 2.7219 -0.1493 -1.8201 18 8 0.9933 -1.2903 -2.0058 19 1 -0.3633 0.4959 0.9002 20 1 -0.3634 0.5316 -0.8794 21 1 -0.3632 -1.0275 -0.0207 22 1 3.1544 1.4150 -0.0206 23 1 1.6936 1.9598 -0.8794 24 1 1.7271 1.9473 0.9002 25 1 1.3287 -1.4949 1.5721 26 1 2.3465 -0.0912 2.0179 27 1 5.4203 -4.5252 0.4210 28 1 1.2751 -1.8402 -2.7496 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306183955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -107.114540 kcal Electronic energy + Delta-G solvation = -12141.508660 eV Core-core repulsion = 9964.188813 eV Total energy + Delta-G solvation = -2177.319847 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.95436 -35.03103 -33.55323 -32.27212 -28.30786 -26.82291 -25.16215 -24.38792 -20.88965 -18.54450 -16.96765 -16.09679 -14.80304 -14.40182 -14.18729 -14.11983 -13.47694 -12.61917 -12.42537 -12.09929 -11.71252 -11.53443 -11.23790 -11.05981 -10.92016 -10.54395 -10.43908 -9.86770 -9.77692 -9.35263 -8.77622 -8.61846 -8.04850 -6.06798 -4.21865 3.28809 3.33848 3.35640 4.36527 4.85864 5.06912 5.32557 5.39696 5.64672 5.83642 6.00396 6.08370 6.19322 6.22180 6.35317 6.41292 6.46737 6.52750 6.66717 6.79765 6.92913 7.37692 7.80203 8.10607 8.32702 8.54265 8.89929 9.49536 11.00894 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058945 B = 0.012950 C = 0.012269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.907605 B = 2161.631350 C = 2281.612339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.100 4.100 3 C -0.130 4.130 4 C 0.046 3.954 5 O -0.350 6.350 6 C 0.182 3.818 7 H 0.032 0.968 8 C -0.540 4.540 9 H 0.063 0.937 10 C 0.078 3.922 11 N -0.860 5.860 12 Si 0.895 3.105 13 H -0.285 1.285 14 H -0.275 1.275 15 H -0.275 1.275 16 C 0.082 3.918 17 H 0.059 0.941 18 O -0.569 6.569 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.263 0.737 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 5.887 -1.141 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.100 4.100 3 C -0.187 4.187 4 C -0.032 4.032 5 O -0.268 6.268 6 C 0.126 3.874 7 H 0.050 0.950 8 C -0.577 4.577 9 H 0.081 0.919 10 C -0.128 4.128 11 N -0.496 5.496 12 Si 0.722 3.278 13 H -0.211 1.211 14 H -0.200 1.200 15 H -0.200 1.200 16 C 0.024 3.976 17 H 0.077 0.923 18 O -0.375 6.375 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.181 6.046 -0.460 7.975 hybrid contribution 1.035 -0.487 -0.913 1.463 sum -4.146 5.559 -1.373 7.069 Atomic orbital electron populations 1.21464 0.93978 1.01942 1.00059 1.21952 0.96242 0.95598 0.96235 1.21762 1.01517 0.94676 1.00787 1.23292 0.90582 0.94392 0.94937 1.89499 1.31387 1.72367 1.33595 1.21204 0.94736 0.90808 0.80636 0.95038 1.20975 1.07816 1.21299 1.07642 0.91870 1.25088 0.98011 0.95084 0.94630 1.70036 1.35951 1.22705 1.20895 0.86632 0.82882 0.78099 0.80203 1.21076 1.20017 1.20011 1.23450 0.86915 0.96079 0.91193 0.92349 1.86329 1.34739 1.71015 1.45443 0.93915 0.92880 0.92271 0.92014 0.93120 0.92966 0.94023 0.91210 0.92716 0.77765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 7.53 37.16 0.28 -1.70 15 2 C -0.10 -1.92 1.05 -152.94 -0.16 -2.08 15 3 C -0.13 -2.16 8.29 37.16 0.31 -1.85 15 4 C 0.05 0.98 6.74 37.94 0.26 1.24 15 5 O -0.35 -9.47 10.87 -35.23 -0.38 -9.85 15 6 C 0.18 4.79 2.85 -27.11 -0.08 4.72 15 7 H 0.03 0.91 8.09 -51.93 -0.42 0.49 15 8 C -0.54 -15.12 8.78 -34.44 -0.30 -15.42 15 9 H 0.06 1.69 7.59 -52.49 -0.40 1.29 15 10 C 0.08 2.23 5.42 -17.82 -0.10 2.13 15 11 N -0.86 -25.79 12.94 55.43 0.72 -25.07 15 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 16 C 0.08 1.79 3.64 -25.17 -0.09 1.70 15 17 H 0.06 1.28 7.32 -51.93 -0.38 0.90 15 18 O -0.57 -11.26 11.62 -35.23 -0.41 -11.67 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.86 8.05 -51.93 -0.42 0.44 15 21 H 0.06 1.06 7.75 -51.93 -0.40 0.66 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 25 H 0.04 0.87 7.87 -51.93 -0.41 0.46 15 26 H 0.07 1.32 7.87 -51.93 -0.41 0.91 15 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 28 H 0.38 6.39 9.11 45.56 0.42 6.80 15 LS Contribution 235.11 15.07 3.54 3.54 Total: -1.00 -31.10 235.11 -4.69 -35.79 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.25 Total: 2.29 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 0.11 Total: -11.26 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.72 Total: -25.07 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.79 Total: -21.52 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.10 -4.69 -35.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.326 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds