Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.45411 * 2 1 4 4 C 1.54485 * 110.51328 * 122.60336 * 2 1 3 5 5 O 1.44424 * 104.79904 * 142.62526 * 4 2 1 6 6 C 1.44424 * 105.27845 * 319.49112 * 5 4 2 7 7 H 1.09001 * 110.37102 * 281.57457 * 6 5 4 8 8 C 1.50694 * 110.37446 * 159.34371 * 6 5 4 9 9 H 1.08000 * 120.00563 * 241.45228 * 8 6 5 10 10 C 1.37885 * 119.99902 * 61.45392 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.54475 * 104.80207 * 40.51113 * 6 5 4 17 17 H 1.09006 * 110.51334 * 94.67287 * 16 6 5 18 18 O 1.42902 * 110.51219 * 217.37919 * 16 6 5 19 19 H 1.09007 * 109.46867 * 298.84730 * 1 2 3 20 20 H 1.08994 * 109.47430 * 58.84883 * 1 2 3 21 21 H 1.09001 * 109.46483 * 178.84849 * 1 2 3 22 22 H 1.09004 * 109.47339 * 181.14926 * 3 2 1 23 23 H 1.08994 * 109.47498 * 301.15389 * 3 2 1 24 24 H 1.09004 * 109.47425 * 61.15269 * 3 2 1 25 25 H 1.08995 * 110.36837 * 23.79246 * 4 2 1 26 26 H 1.08996 * 110.37409 * 261.45612 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 28 28 H 0.96699 * 113.99885 * 298.54736 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0714 -0.7796 1.2189 5 8 3.2399 -1.4703 0.7257 6 6 2.8759 -1.9428 -0.5896 7 1 2.2581 -2.8376 -0.5138 8 6 4.1106 -2.2265 -1.4056 9 1 4.2920 -1.6793 -2.3189 10 6 5.0090 -3.1848 -0.9862 11 7 4.7884 -3.8508 0.1262 12 14 6.5392 -3.5369 -1.9980 13 1 7.3362 -4.6010 -1.3362 14 1 6.1418 -3.9876 -3.3560 15 1 7.3564 -2.3017 -2.1058 16 6 2.0715 -0.7828 -1.2170 17 1 2.7219 -0.1493 -1.8201 18 8 0.9933 -1.2903 -2.0058 19 1 -0.3633 0.4959 0.9002 20 1 -0.3634 0.5316 -0.8794 21 1 -0.3632 -1.0275 -0.0207 22 1 3.1544 1.4150 -0.0206 23 1 1.6936 1.9598 -0.8794 24 1 1.7271 1.9473 0.9002 25 1 1.3287 -1.4949 1.5721 26 1 2.3465 -0.0912 2.0179 27 1 5.4203 -4.5252 0.4210 28 1 1.2751 -1.8402 -2.7496 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -130.737824 kcal Electronic energy + Delta-G solvation = -12142.533042 eV Core-core repulsion = 9964.188813 eV Total energy + Delta-G solvation = -2178.344229 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.69764 -36.76196 -35.32665 -34.25083 -30.29478 -28.14538 -26.85494 -26.29225 -22.82020 -20.16851 -18.91111 -17.89931 -16.76990 -16.18671 -15.97177 -15.83601 -15.11999 -14.28160 -14.03147 -13.92461 -13.28263 -12.98975 -12.85194 -12.77875 -12.73905 -12.28501 -12.05415 -11.67422 -11.48721 -11.04937 -10.74725 -10.61317 -10.02025 -8.21019 -6.44226 1.39897 1.43376 1.51163 2.37348 2.98584 3.35778 3.59429 3.89718 4.05923 4.20944 4.43507 4.51332 4.64343 4.80448 4.82535 4.85938 5.01220 5.10163 5.16589 5.32062 5.36060 5.53837 5.64513 6.01975 6.42168 6.77847 6.93515 7.32441 8.87610 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058945 B = 0.012950 C = 0.012269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.907605 B = 2161.631350 C = 2281.612339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.125 4.125 4 C 0.038 3.962 5 O -0.389 6.389 6 C 0.177 3.823 7 H -0.008 1.008 8 C -0.559 4.559 9 H 0.071 0.929 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 0.969 3.031 13 H -0.283 1.283 14 H -0.260 1.260 15 H -0.269 1.269 16 C 0.091 3.909 17 H 0.057 0.943 18 O -0.566 6.566 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.264 0.736 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 7.329 -1.805 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.182 4.182 4 C -0.040 4.040 5 O -0.308 6.308 6 C 0.121 3.879 7 H 0.010 0.990 8 C -0.596 4.596 9 H 0.089 0.911 10 C -0.182 4.182 11 N -0.540 5.540 12 Si 0.792 3.208 13 H -0.208 1.208 14 H -0.185 1.185 15 H -0.194 1.194 16 C 0.032 3.968 17 H 0.075 0.925 18 O -0.373 6.373 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.373 7.496 -1.142 9.293 hybrid contribution 1.021 -0.942 -0.670 1.542 sum -4.352 6.554 -1.812 8.073 Atomic orbital electron populations 1.21414 0.91901 1.01417 1.01979 1.22007 0.97891 0.96454 0.93419 1.21738 1.00389 0.93022 1.03084 1.23584 0.89071 0.94715 0.96606 1.89401 1.34139 1.73201 1.34097 1.21118 0.94399 0.91277 0.81100 0.98991 1.21423 1.08488 1.21461 1.08250 0.91097 1.26056 1.01555 0.94802 0.95770 1.70189 1.37334 1.23579 1.22935 0.85471 0.78419 0.77996 0.78897 1.20836 1.18453 1.19350 1.23256 0.86999 0.94455 0.92115 0.92488 1.86317 1.34044 1.71175 1.45768 0.91058 0.91901 0.94001 0.93702 0.91412 0.90160 0.94337 0.88750 0.92747 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.40 7.53 71.98 0.54 -2.86 15 2 C -0.10 -3.55 1.05 -51.16 -0.05 -3.61 15 3 C -0.13 -3.77 8.29 71.98 0.60 -3.17 15 4 C 0.04 1.57 6.74 72.49 0.49 2.06 15 5 O -0.39 -21.46 10.87 -148.98 -1.62 -23.08 15 6 C 0.18 9.54 2.85 30.35 0.09 9.63 15 7 H -0.01 -0.45 8.09 -2.39 -0.02 -0.47 15 8 C -0.56 -31.70 8.78 25.60 0.22 -31.47 15 9 H 0.07 3.78 7.59 -2.91 -0.02 3.76 15 10 C 0.02 1.18 5.42 84.66 0.46 1.64 15 11 N -0.90 -55.55 12.94 21.45 0.28 -55.27 15 12 Si 0.97 43.79 29.54 68.60 2.03 45.82 15 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 16 C 0.09 3.90 3.64 31.61 0.12 4.01 15 17 H 0.06 2.45 7.32 -2.38 -0.02 2.44 15 18 O -0.57 -21.88 11.62 -148.98 -1.73 -23.61 15 19 H 0.07 1.80 8.14 -2.38 -0.02 1.78 15 20 H 0.06 1.83 8.05 -2.39 -0.02 1.81 15 21 H 0.04 1.43 7.75 -2.39 -0.02 1.41 15 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.04 1.60 7.87 -2.39 -0.02 1.58 15 26 H 0.09 3.41 7.87 -2.39 -0.02 3.39 15 27 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 28 H 0.39 12.91 9.11 -74.06 -0.67 12.24 15 Total: -1.00 -67.43 235.11 1.88 -65.56 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.46 Total: 14.35 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 2.46 Total: -23.77 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.28 Total: -55.27 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -3.35 Total: -46.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.43 1.88 -65.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.179 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds