Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 110.45928 * 2 1 4 4 C 1.54483 * 110.50968 * 237.24603 * 2 1 3 5 5 O 1.44425 * 104.80587 * 265.33515 * 4 2 1 6 6 C 1.44421 * 105.27596 * 319.48774 * 5 4 2 7 7 H 1.09001 * 110.37255 * 281.68134 * 6 5 4 8 8 C 1.50693 * 110.37557 * 159.34182 * 6 5 4 9 9 H 1.08007 * 119.99663 * 339.68060 * 8 6 5 10 10 C 1.37878 * 120.00196 * 159.67292 * 8 6 5 11 11 N 1.31522 * 119.99917 * 180.02562 * 10 8 6 12 12 Si 1.86797 * 120.00124 * 0.02562 * 10 8 6 13 13 H 1.48499 * 109.46882 * 89.99781 * 12 10 8 14 14 H 1.48503 * 109.47157 * 209.99805 * 12 10 8 15 15 H 1.48498 * 109.47074 * 329.99828 * 12 10 8 16 16 C 1.54486 * 104.80069 * 40.51223 * 6 5 4 17 17 H 1.09007 * 110.50769 * 217.37731 * 16 6 5 18 18 O 1.42900 * 110.62623 * 94.72561 * 16 6 5 19 19 H 1.09002 * 109.47345 * 297.39244 * 1 2 3 20 20 H 1.09003 * 109.47287 * 57.39223 * 1 2 3 21 21 H 1.09003 * 109.47735 * 177.39350 * 1 2 3 22 22 H 1.08999 * 109.47029 * 182.60476 * 3 2 1 23 23 H 1.08995 * 109.46828 * 302.60891 * 3 2 1 24 24 H 1.09000 * 109.46465 * 62.60621 * 3 2 1 25 25 H 1.09000 * 110.37384 * 24.16910 * 4 2 1 26 26 H 1.09001 * 110.37065 * 146.38935 * 4 2 1 27 27 H 0.96994 * 120.00010 * 180.02562 * 11 10 8 28 28 H 0.96697 * 114.00280 * 71.35999 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0712 -0.7828 -1.2169 5 8 2.3069 -2.1187 -0.7212 6 6 2.8756 -1.9416 0.5945 7 1 3.9301 -1.6757 0.5194 8 6 2.7066 -3.1959 1.4124 9 1 1.9552 -3.9218 1.1387 10 6 3.5113 -3.4169 2.5100 11 7 3.3641 -4.5119 3.2235 12 14 4.8105 -2.1611 2.9836 13 1 4.2239 -1.1725 3.9236 14 1 5.9505 -2.8514 3.6389 15 1 5.2901 -1.4613 1.7648 16 6 2.0713 -0.7799 1.2190 17 1 2.7219 -0.1449 1.8204 18 8 0.9932 -1.2826 2.0109 19 1 -0.3634 0.4728 0.9124 20 1 -0.3634 0.5538 -0.8657 21 1 -0.3635 -1.0266 -0.0467 22 1 3.1536 1.4150 -0.0467 23 1 1.6728 1.9674 -0.8656 24 1 1.7487 1.9391 0.9125 25 1 1.3310 -0.8000 -2.0168 26 1 3.0012 -0.3381 -1.5710 27 1 3.9299 -4.6672 3.9958 28 1 1.2732 -1.7000 2.8370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183959.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = -125.347530 kcal Electronic energy + Delta-G solvation = -12317.242413 eV Core-core repulsion = 10139.131925 eV Total energy + Delta-G solvation = -2178.110489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.85909 -36.64809 -35.41190 -34.41905 -30.73113 -28.14614 -26.95908 -26.38154 -22.48080 -20.24966 -19.21232 -17.75485 -17.06468 -16.78746 -16.24884 -15.54128 -14.67060 -14.62143 -14.31391 -13.90055 -13.41301 -13.02946 -12.91229 -12.87012 -12.74214 -12.16055 -11.91082 -11.69945 -11.42077 -11.30248 -10.99577 -10.65596 -10.12803 -8.37736 -6.45174 1.27563 1.32004 1.41122 2.23981 2.84546 3.33146 3.44899 3.79050 4.04048 4.14485 4.35654 4.42634 4.54936 4.73295 4.78176 4.85165 4.98102 5.03203 5.10009 5.17447 5.34396 5.48278 5.55409 5.89838 6.45572 6.60385 6.99514 7.17366 8.78834 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.016096 C = 0.015460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.783279 B = 1739.137306 C = 1810.671609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.131 4.131 4 C 0.041 3.959 5 O -0.403 6.403 6 C 0.139 3.861 7 H 0.037 0.963 8 C -0.511 4.511 9 H 0.024 0.976 10 C 0.022 3.978 11 N -0.937 5.937 12 Si 0.933 3.067 13 H -0.249 1.249 14 H -0.279 1.279 15 H -0.246 1.246 16 C 0.074 3.926 17 H 0.059 0.941 18 O -0.556 6.556 19 H 0.056 0.944 20 H 0.075 0.925 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.272 0.728 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 13.805 -4.256 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.188 4.188 4 C -0.036 4.036 5 O -0.322 6.322 6 C 0.082 3.918 7 H 0.054 0.946 8 C -0.548 4.548 9 H 0.043 0.957 10 C -0.177 4.177 11 N -0.575 5.575 12 Si 0.755 3.245 13 H -0.173 1.173 14 H -0.205 1.205 15 H -0.170 1.170 16 C 0.014 3.986 17 H 0.076 0.924 18 O -0.362 6.362 19 H 0.075 0.925 20 H 0.093 0.907 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.598 13.729 -4.700 14.523 hybrid contribution 0.892 -0.477 1.018 1.435 sum 0.294 13.251 -3.682 13.757 Atomic orbital electron populations 1.21390 0.92668 1.00808 1.01781 1.22098 0.98079 0.96591 0.93020 1.21811 1.01026 0.92445 1.03485 1.23722 1.00465 0.83035 0.96343 1.89117 1.83634 1.26906 1.32589 1.21795 0.93218 0.95331 0.81500 0.94602 1.20763 1.18485 1.04778 1.10810 0.95722 1.25744 0.98745 0.97488 0.95673 1.70030 1.41107 1.27496 1.18893 0.85956 0.79198 0.79539 0.79777 1.17307 1.20452 1.16955 1.23362 0.88846 0.93702 0.92672 0.92364 1.86274 1.33796 1.79049 1.37081 0.92510 0.90650 0.95082 0.92087 0.89601 0.91724 0.88178 0.91220 0.91834 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 7.51 71.98 0.54 -2.94 15 2 C -0.10 -3.25 1.05 -51.17 -0.05 -3.30 15 3 C -0.13 -3.14 8.31 71.98 0.60 -2.54 15 4 C 0.04 1.44 6.74 72.49 0.49 1.93 15 5 O -0.40 -19.74 11.33 -148.98 -1.69 -21.43 15 6 C 0.14 6.88 2.71 30.35 0.08 6.96 15 7 H 0.04 1.75 5.70 -2.39 -0.01 1.74 15 8 C -0.51 -30.14 7.83 25.60 0.20 -29.93 15 9 H 0.02 1.69 8.06 -2.91 -0.02 1.67 15 10 C 0.02 1.26 5.40 84.65 0.46 1.72 15 11 N -0.94 -57.06 13.96 21.45 0.30 -56.77 15 12 Si 0.93 41.22 26.74 68.60 1.83 43.06 15 13 H -0.25 -10.05 7.11 99.48 0.71 -9.35 15 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 15 H -0.25 -10.16 6.03 99.48 0.60 -9.56 15 16 C 0.07 3.10 3.44 31.61 0.11 3.21 15 17 H 0.06 2.23 7.16 -2.38 -0.02 2.21 15 18 O -0.56 -25.12 10.89 -148.98 -1.62 -26.74 15 19 H 0.06 1.77 7.91 -2.39 -0.02 1.75 15 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.03 1.18 7.92 -2.39 -0.02 1.16 15 22 H 0.06 1.40 8.09 -2.39 -0.02 1.38 15 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 25 H 0.10 3.03 7.87 -2.39 -0.02 3.01 15 26 H 0.07 2.11 7.83 -2.39 -0.02 2.09 15 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 28 H 0.38 16.97 8.27 -74.06 -0.61 16.36 15 Total: -1.00 -68.06 227.71 1.67 -66.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.42 Total: 20.38 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 2.42 Total: -24.90 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.30 Total: -56.77 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -3.31 Total: -48.17 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.83 Total: 43.06 kcal Total: -68.06 1.67 -66.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183959.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.952 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds