Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41604 * 114.00165 * 2 1 4 4 C 1.36930 * 120.00333 * 270.00347 * 3 2 1 5 5 H 1.07993 * 120.00442 * 179.97438 * 4 3 2 6 6 C 1.38819 * 119.99978 * 359.97438 * 4 3 2 7 7 N 1.31624 * 119.99827 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00193 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46924 * 60.00066 * 8 6 4 10 10 H 1.48497 * 109.47073 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46927 * 300.00580 * 8 6 4 12 12 C 1.46501 * 119.99591 * 90.00482 * 3 2 1 13 13 C 1.54270 * 110.03162 * 122.09430 * 12 3 2 14 14 C 1.54961 * 104.16191 * 95.75208 * 13 12 3 15 15 C 1.54895 * 102.77671 * 37.88526 * 14 13 12 16 16 C 1.53869 * 110.03042 * 239.30959 * 12 3 2 17 17 H 1.09000 * 109.47680 * 59.99321 * 1 2 3 18 18 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46862 * 299.99375 * 1 2 3 20 20 H 0.96993 * 119.99764 * 179.97438 * 7 6 4 21 21 H 1.09002 * 110.01794 * 0.70074 * 12 3 2 22 22 H 1.08997 * 110.48585 * 214.40010 * 13 12 3 23 23 H 1.09002 * 110.48442 * 337.03893 * 13 12 3 24 24 H 1.09001 * 110.71970 * 279.57802 * 14 13 12 25 25 H 1.08991 * 110.92569 * 156.29385 * 14 13 12 26 26 H 1.08997 * 110.48689 * 203.40743 * 15 14 13 27 27 H 1.09000 * 110.59637 * 80.82119 * 15 14 13 28 28 H 1.08999 * 110.03405 * 359.95371 * 16 12 3 29 29 H 1.08996 * 110.03529 * 121.38320 * 16 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2834 1.9191 -1.1858 5 1 2.7223 2.9059 -1.1858 6 6 2.0015 1.2849 -2.3881 7 7 1.4661 0.0825 -2.3881 8 14 2.3807 2.1385 -4.0058 9 1 3.8354 2.4264 -4.0845 10 1 1.9882 1.2570 -5.1345 11 1 1.6194 3.4111 -4.0842 12 6 2.3029 1.9626 1.2688 13 6 3.8034 2.3138 1.3414 14 6 3.8718 3.7859 0.8623 15 6 2.5943 4.4069 1.4799 16 6 1.5344 3.2928 1.3565 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.2688 -0.3604 -3.2281 21 1 2.0296 1.3177 2.1039 22 1 4.1659 2.2289 2.3657 23 1 4.3787 1.6685 0.6774 24 1 3.8399 3.8392 -0.2259 25 1 4.7651 4.2789 1.2457 26 1 2.2882 5.2887 0.9171 27 1 2.7594 4.6620 2.5267 28 1 0.9403 3.4409 0.4547 29 1 0.8880 3.2934 2.2341 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306262185.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = 23.252437 kcal Electronic energy + Delta-G solvation = -12152.064568 eV Core-core repulsion = 10078.116520 eV Total energy + Delta-G solvation = -2073.948048 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.75726 -35.09151 -32.01397 -30.10567 -27.92711 -26.70028 -24.95581 -22.69889 -19.96302 -19.05009 -17.33889 -15.55239 -14.59753 -14.25317 -14.09216 -13.38845 -13.27884 -12.60246 -12.22413 -11.31866 -10.94417 -10.92919 -10.78803 -10.66692 -10.47419 -10.31262 -10.27271 -9.97104 -9.70945 -9.36131 -8.81292 -8.14154 -6.84815 -5.61165 -3.06488 3.42135 3.46226 3.47728 4.18197 4.73784 5.32290 5.37441 5.56109 5.65963 6.09747 6.23414 6.24852 6.33203 6.43723 6.51007 6.55967 6.59095 6.70232 6.73403 6.88584 6.97824 7.16445 7.28555 7.36813 7.82584 8.43904 9.37698 10.01087 10.43484 11.46634 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.018790 C = 0.014036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.076140 B = 1489.811083 C = 1994.376143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.116 6.116 3 N -0.461 5.461 4 C -0.263 4.263 5 H 0.095 0.905 6 C 0.004 3.996 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.285 1.285 12 C 0.181 3.819 13 C -0.128 4.128 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.146 4.146 17 H 0.047 0.953 18 H 0.055 0.945 19 H -0.004 1.004 20 H 0.248 0.752 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 5.354 6.111 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.120 6.120 3 N -0.226 5.226 4 C -0.390 4.390 5 H 0.112 0.888 6 C -0.195 4.195 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.212 1.212 12 C 0.074 3.926 13 C -0.167 4.167 14 C -0.161 4.161 15 C -0.157 4.157 16 C -0.186 4.186 17 H 0.065 0.935 18 H 0.073 0.927 19 H 0.015 0.985 20 H 0.058 0.942 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.105 5.017 5.956 7.866 hybrid contribution -0.385 0.504 -0.982 1.169 sum 0.721 5.522 4.974 7.467 Atomic orbital electron populations 1.22840 0.87755 0.98986 0.97497 1.90665 1.15638 1.09789 1.95947 1.46276 1.64960 1.10550 1.00862 1.19448 1.37256 0.99839 0.82436 0.88771 1.24894 1.00893 0.96253 0.97500 1.70163 1.45528 1.12578 1.24366 0.86441 0.78231 0.78513 0.83985 1.20914 1.21613 1.21197 1.21039 0.92970 0.91217 0.87360 1.22727 0.98072 0.96397 0.99520 1.22551 0.96227 0.95905 1.01380 1.22266 0.96286 0.97784 0.99335 1.22863 0.98213 0.96211 1.01277 0.93469 0.92681 0.98516 0.94193 0.92263 0.92856 0.90504 0.90628 0.93118 0.92740 0.92843 0.90606 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.63 101.05 1.07 1.79 15 2 O -0.12 -3.23 9.55 -11.47 -0.11 -3.34 15 3 N -0.46 -12.04 2.90 -52.34 -0.15 -12.19 15 4 C -0.26 -7.18 8.36 -15.06 -0.13 -7.31 15 5 H 0.09 2.44 5.16 -52.49 -0.27 2.17 15 6 C 0.00 0.12 5.49 -17.43 -0.10 0.02 15 7 N -0.88 -26.44 9.93 55.49 0.55 -25.89 15 8 Si 0.90 21.98 29.55 -169.99 -5.02 16.95 15 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 15 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 12 C 0.18 3.83 3.75 -66.81 -0.25 3.58 15 13 C -0.13 -2.40 6.10 -25.03 -0.15 -2.56 15 14 C -0.12 -2.11 6.45 -24.70 -0.16 -2.27 15 15 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 15 16 C -0.15 -2.74 6.24 -25.62 -0.16 -2.90 15 17 H 0.05 1.26 7.29 -51.93 -0.38 0.88 15 18 H 0.05 1.23 8.14 -51.93 -0.42 0.81 15 19 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 15 20 H 0.25 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.06 1.21 8.13 -51.93 -0.42 0.79 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.08 1.62 7.97 -51.93 -0.41 1.21 15 24 H 0.08 1.44 6.03 -51.93 -0.31 1.13 15 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.08 1.62 7.34 -51.93 -0.38 1.24 15 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 234.34 15.07 3.53 3.53 Total: -1.00 -30.30 234.34 -5.52 -35.82 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.27 Total: -3.16 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.04 Total: -11.73 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.40 Total: -38.08 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.11 Total: -3.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.30 -5.52 -35.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306262185.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.069 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds