Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99982 * 2 1 4 4 C 1.53005 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.27236 * 52.91223 * 4 3 2 6 6 C 1.54947 * 110.30727 * 174.99659 * 4 3 2 7 7 C 1.55306 * 100.93894 * 155.46068 * 6 4 3 8 8 C 1.54387 * 102.25329 * 325.86664 * 7 6 4 9 9 H 1.09000 * 109.83293 * 261.75219 * 8 7 6 10 10 C 1.50700 * 109.82869 * 140.86923 * 8 7 6 11 11 H 1.08002 * 119.99770 * 0.19046 * 10 8 7 12 12 C 1.37871 * 120.00083 * 180.18725 * 10 8 7 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 O 1.43234 * 107.66365 * 21.31303 * 8 7 6 19 19 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47095 * 300.00529 * 1 2 3 21 21 H 1.09007 * 109.46605 * 60.00345 * 1 2 3 22 22 H 1.08994 * 109.47159 * 60.00012 * 3 2 1 23 23 H 1.08997 * 109.47241 * 299.99260 * 3 2 1 24 24 H 1.09003 * 111.12381 * 37.54473 * 6 4 3 25 25 H 1.09000 * 111.13063 * 273.37983 * 6 4 3 26 26 H 1.08997 * 110.84920 * 207.67993 * 7 6 4 27 27 H 1.08998 * 111.02149 * 84.13923 * 7 6 4 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8636 0.5399 -0.8148 6 6 4.1860 2.5852 -0.1261 7 6 5.5727 2.3259 0.5233 8 6 5.2328 1.2955 1.6216 9 1 5.1263 1.8001 2.5819 10 6 6.3244 0.2601 1.7066 11 1 7.1803 0.3226 1.0509 12 6 6.2305 -0.7671 2.6215 13 7 5.1881 -0.8435 3.4197 14 14 7.5840 -2.0502 2.7275 15 1 7.2472 -3.0390 3.7829 16 1 7.7114 -2.7442 1.4208 17 1 8.8695 -1.3871 3.0633 18 8 3.9959 0.6692 1.2620 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.6886 1.8463 0.8899 23 1 1.6887 1.8463 -0.8900 24 1 3.6232 3.3318 0.4343 25 1 4.2900 2.8770 -1.1711 26 1 5.9736 3.2405 0.9602 27 1 6.2709 1.9054 -0.2004 28 1 4.4855 -0.1770 3.3650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = -128.179863 kcal Electronic energy + Delta-G solvation = -11801.136493 eV Core-core repulsion = 9622.903185 eV Total energy + Delta-G solvation = -2178.233308 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.29085 -38.46654 -34.93040 -32.85705 -31.54747 -28.20196 -26.76715 -24.84019 -22.34181 -22.00340 -19.10892 -17.83409 -17.20992 -16.90930 -16.08313 -15.67839 -15.46664 -15.36446 -14.16202 -13.88628 -13.53233 -13.02583 -12.61071 -12.49411 -12.27893 -12.21721 -11.93621 -11.90306 -11.59747 -11.01971 -10.67036 -10.59089 -9.85752 -8.62666 -6.41358 1.51065 1.61139 1.79905 2.58312 2.81319 3.04957 3.43222 3.77632 3.99794 4.13307 4.26299 4.29114 4.49807 4.51133 4.53276 4.68167 4.78378 4.80240 4.85179 5.03370 5.14202 5.46818 5.97291 6.09558 6.26342 6.56331 6.72574 7.53833 8.77544 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.043169 B = 0.012388 C = 0.010313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.464583 B = 2259.775605 C = 2714.452939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.071 3.929 4 C 0.065 3.935 5 H 0.047 0.953 6 C -0.131 4.131 7 C -0.131 4.131 8 C 0.173 3.827 9 H 0.000 1.000 10 C -0.638 4.638 11 H 0.053 0.947 12 C -0.026 4.026 13 N -0.921 5.921 14 Si 1.118 2.882 15 H -0.284 1.284 16 H -0.273 1.273 17 H -0.263 1.263 18 O -0.406 6.406 19 H 0.091 0.909 20 H 0.043 0.957 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 6.127 -8.310 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.005 4.005 4 C 0.007 3.993 5 H 0.065 0.935 6 C -0.168 4.168 7 C -0.169 4.169 8 C 0.117 3.883 9 H 0.018 0.982 10 C -0.675 4.675 11 H 0.071 0.929 12 C -0.227 4.227 13 N -0.557 5.557 14 Si 0.939 3.061 15 H -0.209 1.209 16 H -0.199 1.199 17 H -0.188 1.188 18 O -0.327 6.327 19 H 0.109 0.891 20 H 0.062 0.938 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.058 4.479 -7.390 10.012 hybrid contribution -0.681 1.608 -0.620 1.853 sum -5.739 6.086 -8.009 11.581 Atomic orbital electron populations 1.22936 0.79481 1.03654 1.00972 1.87965 1.21720 1.29036 1.95548 1.22768 0.91747 0.84619 1.01362 1.23080 0.93265 0.94965 0.88022 0.93471 1.23152 0.95157 0.95349 1.03126 1.22972 0.97590 0.98572 0.97722 1.20452 0.82780 0.91893 0.93137 0.98241 1.22702 1.06683 1.14779 1.23373 0.92899 1.27459 1.01960 1.01211 0.92026 1.70795 1.09766 1.36582 1.38567 0.82963 0.72689 0.73622 0.76839 1.20902 1.19888 1.18785 1.88673 1.40675 1.66474 1.36907 0.89061 0.93794 0.91803 0.93291 0.88925 0.89415 0.87245 0.90022 0.91649 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 15 2 O -0.42 -16.37 10.70 -148.85 -1.59 -17.96 15 3 C 0.07 2.44 5.65 71.98 0.41 2.85 15 4 C 0.06 2.69 3.72 31.26 0.12 2.81 15 5 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 6 C -0.13 -4.29 6.57 32.05 0.21 -4.07 15 7 C -0.13 -5.36 6.53 31.86 0.21 -5.15 15 8 C 0.17 9.45 2.94 30.32 0.09 9.53 15 9 H 0.00 0.00 7.99 -2.39 -0.02 -0.02 15 10 C -0.64 -38.38 8.75 25.60 0.22 -38.15 15 11 H 0.05 3.06 7.52 -2.91 -0.02 3.04 15 12 C -0.03 -1.58 5.41 84.65 0.46 -1.12 15 13 N -0.92 -61.05 13.55 21.45 0.29 -60.76 15 14 Si 1.12 52.86 29.90 68.60 2.05 54.92 15 15 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 18 O -0.41 -22.60 9.54 -148.85 -1.42 -24.02 15 19 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.04 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.06 1.29 8.14 -2.38 -0.02 1.27 15 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.09 2.55 8.06 -2.39 -0.02 2.53 15 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 26 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 27 H 0.06 2.69 7.65 -2.39 -0.02 2.67 15 28 H 0.26 17.89 6.54 -92.70 -0.61 17.29 15 Total: -1.00 -75.80 238.49 3.57 -72.23 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.28 Total: 7.00 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 2.96 Total: -31.40 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.29 Total: -60.76 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -3.01 Total: -41.99 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.05 Total: 54.92 kcal Total: -75.80 3.57 -72.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.949 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds