Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.86809 * 54.55397 * 4 3 2 6 6 C 1.54101 * 109.87849 * 175.71417 * 4 3 2 7 7 C 1.54809 * 104.18657 * 121.45694 * 6 4 3 8 8 C 1.54990 * 102.09428 * 20.88047 * 7 6 4 9 9 H 1.08995 * 110.75308 * 81.54496 * 8 7 6 10 10 C 1.50706 * 110.61953 * 204.47872 * 8 7 6 11 11 H 1.08000 * 119.99853 * 355.52239 * 10 8 7 12 12 C 1.37872 * 119.99841 * 175.52251 * 10 8 7 13 13 N 1.31512 * 120.00369 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99913 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46932 * 60.00360 * 14 12 10 16 16 H 1.48499 * 109.47518 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47486 * 300.00418 * 14 12 10 18 18 O 1.43746 * 109.87904 * 293.54655 * 4 3 2 19 19 H 1.09010 * 109.47210 * 60.00116 * 1 2 3 20 20 H 1.09002 * 109.47724 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47704 * 300.00468 * 1 2 3 22 22 H 1.09012 * 109.46839 * 59.99401 * 3 2 1 23 23 H 1.08999 * 109.47078 * 299.99583 * 3 2 1 24 24 H 1.09001 * 110.48854 * 240.12839 * 6 4 3 25 25 H 1.08998 * 110.48717 * 2.64843 * 6 4 3 26 26 H 1.09006 * 110.90496 * 262.68247 * 7 6 4 27 27 H 1.09000 * 110.90642 * 139.08198 * 7 6 4 28 28 H 0.97002 * 119.99844 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8581 0.5625 -0.8342 6 6 4.1720 2.5837 -0.1077 7 6 5.0490 2.7009 1.1626 8 6 5.2506 1.2155 1.5563 9 1 6.0488 0.7646 0.9668 10 6 5.5460 1.0920 3.0289 11 1 5.6626 1.9800 3.6326 12 6 5.6675 -0.1544 3.6055 13 7 5.5261 -1.2357 2.8704 14 14 6.0345 -0.3074 5.4307 15 1 4.9510 0.3441 6.2097 16 1 6.1160 -1.7433 5.8007 17 1 7.3287 0.3554 5.7328 18 8 3.9795 0.6078 1.2402 19 1 -0.3634 0.5139 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3635 0.5139 0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 4.7878 2.6544 -1.0042 25 1 3.4010 3.3542 -0.1138 26 1 4.5244 3.2439 1.9488 27 1 6.0032 3.1757 0.9341 28 1 5.6120 -2.1126 3.2761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306268888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = -97.810120 kcal Electronic energy + Delta-G solvation = -11757.885593 eV Core-core repulsion = 9580.969216 eV Total energy + Delta-G solvation = -2176.916377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.39017 -36.81781 -32.61407 -30.89480 -29.84652 -26.79758 -25.32198 -23.03430 -20.51627 -19.90210 -16.60562 -16.11746 -15.55667 -14.92136 -14.74746 -14.26164 -13.81221 -13.11935 -12.44802 -11.92214 -11.81880 -11.57482 -10.96334 -10.86108 -10.61046 -10.46172 -10.20836 -10.09468 -9.58878 -9.26775 -8.99904 -8.52392 -7.94655 -5.94216 -4.07734 3.36452 3.40952 3.43028 4.22331 4.47120 5.04200 5.40282 5.47408 5.56258 5.58902 5.65041 5.77248 5.86274 5.91081 5.94224 6.28767 6.42887 6.62342 6.68953 6.81145 6.86257 7.56085 7.63341 7.94619 8.28964 8.64770 9.04904 9.62466 11.13554 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042168 B = 0.012329 C = 0.010343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.847710 B = 2270.589052 C = 2706.578138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.069 3.931 4 C 0.069 3.931 5 H 0.054 0.946 6 C -0.149 4.149 7 C -0.147 4.147 8 C 0.206 3.794 9 H 0.026 0.974 10 C -0.534 4.534 11 H 0.063 0.937 12 C 0.077 3.923 13 N -0.860 5.860 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 O -0.340 6.340 19 H 0.032 0.968 20 H 0.081 0.919 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 5.274 -5.300 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.007 4.007 4 C 0.009 3.991 5 H 0.072 0.928 6 C -0.187 4.187 7 C -0.185 4.185 8 C 0.151 3.849 9 H 0.043 0.957 10 C -0.571 4.571 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.496 5.496 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 O -0.259 6.259 19 H 0.051 0.949 20 H 0.099 0.901 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.899 4.740 -5.181 9.171 hybrid contribution -0.044 0.273 0.765 0.814 sum -5.943 5.013 -4.416 8.942 Atomic orbital electron populations 1.22678 0.82413 1.02208 0.99188 1.88029 1.18385 1.27970 1.95148 1.22802 0.94242 0.84533 0.99172 1.22514 0.91201 0.93264 0.92099 0.92819 1.22894 0.99342 0.96979 0.99467 1.23206 0.98191 1.01610 0.95461 1.20693 0.83320 0.84904 0.96033 0.95671 1.20934 1.50405 0.92553 0.93234 0.91857 1.25089 0.93894 0.95935 0.98007 1.70040 1.46341 0.97648 1.35569 0.86671 0.78822 0.77040 0.85469 1.20114 1.21169 1.20123 1.89353 1.38372 1.63747 1.34464 0.94911 0.90084 0.94429 0.93082 0.93738 0.91722 0.92036 0.91709 0.92159 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 15 2 O -0.38 -7.62 10.69 -37.46 -0.40 -8.02 15 3 C 0.07 1.29 5.39 37.16 0.20 1.50 15 4 C 0.07 1.48 3.71 -26.16 -0.10 1.39 15 5 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 6 C -0.15 -2.72 6.64 -25.20 -0.17 -2.89 15 7 C -0.15 -3.13 6.55 -24.73 -0.16 -3.29 15 8 C 0.21 5.55 3.16 -26.83 -0.08 5.46 15 9 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 10 C -0.53 -15.50 8.83 -34.44 -0.30 -15.80 15 11 H 0.06 1.76 7.78 -52.49 -0.41 1.35 15 12 C 0.08 2.26 5.42 -17.82 -0.10 2.16 15 13 N -0.86 -26.61 12.95 55.43 0.72 -25.89 15 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 18 O -0.34 -9.44 10.42 -37.46 -0.39 -9.83 15 19 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 15 20 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.04 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.05 0.96 8.14 -51.92 -0.42 0.53 15 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.06 0.96 7.70 -51.93 -0.40 0.56 15 26 H 0.06 1.38 8.05 -51.93 -0.42 0.96 15 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 LS Contribution 240.74 15.07 3.63 3.63 Total: -1.00 -32.82 240.74 -5.23 -38.05 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -4.17 Total: -4.93 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 0.40 Total: -9.89 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.72 Total: -25.89 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.79 Total: -17.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.82 -5.23 -38.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.762 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds