Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.86809 * 54.55397 * 4 3 2 6 6 C 1.54101 * 109.87849 * 175.71417 * 4 3 2 7 7 C 1.54809 * 104.18657 * 121.45694 * 6 4 3 8 8 C 1.54990 * 102.09428 * 20.88047 * 7 6 4 9 9 H 1.08995 * 110.75308 * 81.54496 * 8 7 6 10 10 C 1.50706 * 110.61953 * 204.47872 * 8 7 6 11 11 H 1.08000 * 119.99853 * 355.52239 * 10 8 7 12 12 C 1.37872 * 119.99841 * 175.52251 * 10 8 7 13 13 N 1.31512 * 120.00369 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99913 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46932 * 60.00360 * 14 12 10 16 16 H 1.48499 * 109.47518 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47486 * 300.00418 * 14 12 10 18 18 O 1.43746 * 109.87904 * 293.54655 * 4 3 2 19 19 H 1.09010 * 109.47210 * 60.00116 * 1 2 3 20 20 H 1.09002 * 109.47724 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47704 * 300.00468 * 1 2 3 22 22 H 1.09012 * 109.46839 * 59.99401 * 3 2 1 23 23 H 1.08999 * 109.47078 * 299.99583 * 3 2 1 24 24 H 1.09001 * 110.48854 * 240.12839 * 6 4 3 25 25 H 1.08998 * 110.48717 * 2.64843 * 6 4 3 26 26 H 1.09006 * 110.90496 * 262.68247 * 7 6 4 27 27 H 1.09000 * 110.90642 * 139.08198 * 7 6 4 28 28 H 0.97002 * 119.99844 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8581 0.5625 -0.8342 6 6 4.1720 2.5837 -0.1077 7 6 5.0490 2.7009 1.1626 8 6 5.2506 1.2155 1.5563 9 1 6.0488 0.7646 0.9668 10 6 5.5460 1.0920 3.0289 11 1 5.6626 1.9800 3.6326 12 6 5.6675 -0.1544 3.6055 13 7 5.5261 -1.2357 2.8704 14 14 6.0345 -0.3074 5.4307 15 1 4.9510 0.3441 6.2097 16 1 6.1160 -1.7433 5.8007 17 1 7.3287 0.3554 5.7328 18 8 3.9795 0.6078 1.2402 19 1 -0.3634 0.5139 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3635 0.5139 0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 4.7878 2.6544 -1.0042 25 1 3.4010 3.3542 -0.1138 26 1 4.5244 3.2439 1.9488 27 1 6.0032 3.1757 0.9341 28 1 5.6120 -2.1126 3.2761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = -121.600270 kcal Electronic energy + Delta-G solvation = -11758.917211 eV Core-core repulsion = 9580.969216 eV Total energy + Delta-G solvation = -2177.947995 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.11341 -38.33099 -34.75878 -32.67602 -31.60353 -28.43488 -26.89615 -24.75940 -22.39833 -21.56106 -18.70726 -17.65022 -17.01422 -16.69925 -16.47571 -16.01403 -15.44847 -14.83502 -14.20200 -13.75978 -13.35232 -13.10508 -12.78437 -12.46177 -12.33584 -12.13742 -11.96489 -11.92415 -11.31280 -11.03261 -10.70857 -10.56793 -9.95909 -8.14883 -6.36617 1.40182 1.44452 1.52076 2.41165 2.90315 3.06923 3.63093 3.94113 4.08132 4.21796 4.34191 4.39604 4.55507 4.56303 4.73184 4.75560 4.82115 4.92574 5.00941 5.15377 5.28649 5.52978 5.74556 6.15660 6.32359 6.58726 6.98335 7.39312 8.93765 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042168 B = 0.012329 C = 0.010343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.847710 B = 2270.589052 C = 2706.578138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.073 3.927 4 C 0.051 3.949 5 H 0.043 0.957 6 C -0.133 4.133 7 C -0.138 4.138 8 C 0.192 3.808 9 H -0.010 1.010 10 C -0.556 4.556 11 H 0.070 0.930 12 C 0.017 3.983 13 N -0.905 5.905 14 Si 0.967 3.033 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.260 1.260 18 O -0.384 6.384 19 H 0.062 0.938 20 H 0.090 0.910 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 6.896 -5.334 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.003 4.003 4 C -0.008 4.008 5 H 0.061 0.939 6 C -0.171 4.171 7 C -0.176 4.176 8 C 0.136 3.864 9 H 0.008 0.992 10 C -0.593 4.593 11 H 0.088 0.912 12 C -0.185 4.185 13 N -0.542 5.542 14 Si 0.791 3.209 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.185 1.185 18 O -0.304 6.304 19 H 0.081 0.919 20 H 0.109 0.891 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.703 6.386 -5.224 10.630 hybrid contribution 0.162 -0.244 0.692 0.751 sum -6.541 6.142 -4.532 10.052 Atomic orbital electron populations 1.22921 0.79685 1.03555 1.00867 1.87964 1.21531 1.29133 1.95513 1.22806 0.92020 0.84465 1.00997 1.22888 0.93712 0.94789 0.89371 0.93921 1.22847 0.99824 0.95665 0.98754 1.23069 0.99961 0.97538 0.96997 1.20654 0.82578 0.88389 0.94748 0.99216 1.21435 1.50155 0.92985 0.94721 0.91216 1.26070 0.93611 0.95524 1.03279 1.70207 1.48029 0.98151 1.37843 0.85501 0.79265 0.77156 0.79004 1.19411 1.20883 1.18469 1.89254 1.38272 1.65478 1.37352 0.91925 0.89101 0.93897 0.93452 0.89334 0.89297 0.88421 0.91697 0.90241 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 15 2 O -0.42 -16.73 10.69 -146.85 -1.57 -18.30 15 3 C 0.07 2.60 5.39 71.98 0.39 2.99 15 4 C 0.05 2.17 3.71 30.97 0.11 2.29 15 5 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 6 C -0.13 -4.50 6.64 31.58 0.21 -4.29 15 7 C -0.14 -5.68 6.55 31.89 0.21 -5.47 15 8 C 0.19 10.56 3.16 30.53 0.10 10.66 15 9 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 10 C -0.56 -32.76 8.83 25.60 0.23 -32.53 15 11 H 0.07 3.88 7.78 -2.91 -0.02 3.85 15 12 C 0.02 1.01 5.42 84.65 0.46 1.47 15 13 N -0.91 -57.82 12.95 21.44 0.28 -57.54 15 14 Si 0.97 45.46 29.54 68.60 2.03 47.49 15 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 15 17 H -0.26 -11.47 7.11 99.48 0.71 -10.77 15 18 O -0.38 -21.79 10.42 -146.85 -1.53 -23.32 15 19 H 0.06 1.32 8.14 -2.38 -0.02 1.30 15 20 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.04 1.10 8.14 -2.38 -0.02 1.08 15 22 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 23 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.10 2.62 7.70 -2.39 -0.02 2.60 15 26 H 0.06 2.64 8.05 -2.38 -0.02 2.62 15 27 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 15 Total: -1.00 -73.27 240.74 3.27 -70.00 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.12 Total: 4.62 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 2.95 Total: -22.94 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.28 Total: -57.54 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -3.10 Total: -41.62 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.27 3.27 -70.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.598 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds