Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00092 * 2 1 4 4 C 1.53002 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.55289 * 307.87806 * 4 3 2 6 6 C 1.55000 * 110.61547 * 184.99829 * 4 3 2 7 7 C 1.54812 * 102.09069 * 204.31780 * 6 4 3 8 8 C 1.54091 * 104.18788 * 20.88384 * 7 6 4 9 9 H 1.08999 * 109.88172 * 242.45031 * 8 7 6 10 10 C 1.50702 * 109.87749 * 121.45084 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.71901 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 O 1.43740 * 107.29864 * 2.02883 * 8 7 6 19 19 H 1.09004 * 109.46864 * 300.00135 * 1 2 3 20 20 H 1.09003 * 109.47152 * 59.99603 * 1 2 3 21 21 H 1.08995 * 109.47504 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47120 * 60.00651 * 3 2 1 23 23 H 1.09001 * 109.46972 * 300.00155 * 3 2 1 24 24 H 1.09003 * 110.90119 * 86.12432 * 6 4 3 25 25 H 1.09001 * 110.93966 * 322.53422 * 6 4 3 26 26 H 1.08998 * 110.48959 * 262.20150 * 7 6 4 27 27 H 1.09001 * 110.59551 * 139.61711 * 7 6 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8677 0.5295 0.8047 6 6 4.1938 2.5821 0.1257 7 6 5.5844 2.3443 -0.5117 8 6 5.3906 1.0885 -1.3834 9 1 6.0314 0.2842 -1.0223 10 6 5.7246 1.4044 -2.8186 11 1 6.0447 2.3989 -3.0923 12 6 5.6276 0.4220 -3.7813 13 7 5.2381 -0.7891 -3.4479 14 14 6.0489 0.8116 -5.5589 15 1 7.4920 0.5517 -5.7939 16 1 5.2384 -0.0471 -6.4594 17 1 5.7515 2.2397 -5.8367 18 8 4.0100 0.7029 -1.2764 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 4.2901 2.8735 1.1717 25 1 3.6318 3.3295 -0.4342 26 1 6.3318 2.1614 0.2603 27 1 5.8743 3.1955 -1.1279 28 1 5.1695 -1.4801 -4.1253 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306268889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = -97.208618 kcal Electronic energy + Delta-G solvation = -11744.817814 eV Core-core repulsion = 9567.927520 eV Total energy + Delta-G solvation = -2176.890294 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.34918 -36.87402 -32.59828 -30.85538 -29.88967 -26.81362 -25.32358 -23.03011 -20.44860 -19.92860 -16.81779 -16.01802 -15.57572 -14.92253 -14.66214 -14.30116 -13.77515 -13.10709 -12.46529 -12.01600 -11.84709 -11.48052 -10.93103 -10.88075 -10.66373 -10.43487 -10.17319 -9.99645 -9.64862 -9.30021 -9.05279 -8.50596 -7.89672 -5.92846 -4.06512 3.34487 3.41002 3.44191 4.19091 4.47558 4.97235 5.42128 5.48016 5.57907 5.59671 5.67392 5.79542 5.86777 5.88973 5.93220 6.31804 6.43324 6.55018 6.71525 6.81792 6.88975 7.60387 7.61975 7.94813 8.31734 8.63379 9.08016 9.63787 11.14427 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.012245 C = 0.010276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.043894 B = 2286.156961 C = 2724.257182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.074 3.926 4 C 0.066 3.934 5 H 0.056 0.944 6 C -0.144 4.144 7 C -0.145 4.145 8 C 0.201 3.799 9 H 0.026 0.974 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.076 3.924 13 N -0.861 5.861 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 O -0.341 6.341 19 H 0.033 0.967 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 4.468 6.454 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.003 4.003 4 C 0.007 3.993 5 H 0.074 0.926 6 C -0.182 4.182 7 C -0.183 4.183 8 C 0.145 3.855 9 H 0.044 0.956 10 C -0.572 4.572 11 H 0.080 0.920 12 C -0.130 4.130 13 N -0.497 5.497 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 O -0.260 6.260 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.647 3.994 6.226 9.306 hybrid contribution 0.052 0.510 -0.798 0.949 sum -5.594 4.504 5.428 9.002 Atomic orbital electron populations 1.22676 0.82256 1.02233 0.99279 1.88007 1.18553 1.28050 1.95197 1.22588 0.93663 0.84547 0.99490 1.22888 0.91302 0.93705 0.91410 0.92620 1.23024 0.97898 0.97515 0.99769 1.23040 0.94954 1.01555 0.98744 1.20308 0.80668 0.89667 0.94839 0.95636 1.21172 1.46785 0.96895 0.92372 0.92024 1.25108 0.93929 0.94974 0.98985 1.70058 1.44066 1.01946 1.33585 0.86632 0.78234 0.78407 0.84875 1.20564 1.21117 1.19818 1.89346 1.28036 1.77913 1.30695 0.94840 0.94356 0.90068 0.93461 0.92799 0.92074 0.91398 0.93052 0.91377 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 15 2 O -0.38 -7.53 10.70 -35.23 -0.38 -7.90 15 3 C 0.07 1.37 5.69 37.16 0.21 1.58 15 4 C 0.07 1.41 3.62 -25.67 -0.09 1.32 15 5 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 6 C -0.14 -2.68 6.59 -24.72 -0.16 -2.84 15 7 C -0.15 -3.10 6.63 -25.21 -0.17 -3.27 15 8 C 0.20 5.43 3.24 -27.31 -0.09 5.34 15 9 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 10 C -0.53 -15.53 8.78 -34.44 -0.30 -15.83 15 11 H 0.06 1.72 7.33 -52.49 -0.38 1.33 15 12 C 0.08 2.23 5.42 -17.82 -0.10 2.13 15 13 N -0.86 -26.68 12.95 55.43 0.72 -25.96 15 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 18 O -0.34 -9.44 10.44 -35.23 -0.37 -9.81 15 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 20 H 0.04 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.07 1.21 8.06 -51.93 -0.42 0.79 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.07 1.43 7.40 -51.93 -0.38 1.05 15 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 240.30 15.07 3.62 3.62 Total: -1.00 -32.92 240.30 -5.14 -38.06 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -4.13 Total: -4.93 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.41 Total: -9.98 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.72 Total: -25.96 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.74 Total: -17.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.92 -5.14 -38.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.146 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds