Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00092 * 2 1 4 4 C 1.53002 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.55289 * 307.87806 * 4 3 2 6 6 C 1.55000 * 110.61547 * 184.99829 * 4 3 2 7 7 C 1.54812 * 102.09069 * 204.31780 * 6 4 3 8 8 C 1.54091 * 104.18788 * 20.88384 * 7 6 4 9 9 H 1.08999 * 109.88172 * 242.45031 * 8 7 6 10 10 C 1.50702 * 109.87749 * 121.45084 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.71901 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 O 1.43740 * 107.29864 * 2.02883 * 8 7 6 19 19 H 1.09004 * 109.46864 * 300.00135 * 1 2 3 20 20 H 1.09003 * 109.47152 * 59.99603 * 1 2 3 21 21 H 1.08995 * 109.47504 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47120 * 60.00651 * 3 2 1 23 23 H 1.09001 * 109.46972 * 300.00155 * 3 2 1 24 24 H 1.09003 * 110.90119 * 86.12432 * 6 4 3 25 25 H 1.09001 * 110.93966 * 322.53422 * 6 4 3 26 26 H 1.08998 * 110.48959 * 262.20150 * 7 6 4 27 27 H 1.09001 * 110.59551 * 139.61711 * 7 6 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8677 0.5295 0.8047 6 6 4.1938 2.5821 0.1257 7 6 5.5844 2.3443 -0.5117 8 6 5.3906 1.0885 -1.3834 9 1 6.0314 0.2842 -1.0223 10 6 5.7246 1.4044 -2.8186 11 1 6.0447 2.3989 -3.0923 12 6 5.6276 0.4220 -3.7813 13 7 5.2381 -0.7891 -3.4479 14 14 6.0489 0.8116 -5.5589 15 1 7.4920 0.5517 -5.7939 16 1 5.2384 -0.0471 -6.4594 17 1 5.7515 2.2397 -5.8367 18 8 4.0100 0.7029 -1.2764 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 4.2901 2.8735 1.1717 25 1 3.6318 3.3295 -0.4342 26 1 6.3318 2.1614 0.2603 27 1 5.8743 3.1955 -1.1279 28 1 5.1695 -1.4801 -4.1253 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = -121.222928 kcal Electronic energy + Delta-G solvation = -11745.859153 eV Core-core repulsion = 9567.927520 eV Total energy + Delta-G solvation = -2177.931632 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07914 -38.37176 -34.74684 -32.64882 -31.63757 -28.44264 -26.88506 -24.80028 -22.19553 -21.68954 -18.90522 -17.53973 -17.00041 -16.74205 -16.22542 -16.12910 -15.56250 -14.83244 -14.15981 -13.78129 -13.37301 -13.08791 -12.80283 -12.51563 -12.28490 -12.16427 -11.91850 -11.78119 -11.43114 -11.04325 -10.70397 -10.57765 -9.94932 -8.13800 -6.35878 1.39624 1.42184 1.52949 2.40968 2.88250 3.05008 3.57596 3.98804 4.11812 4.21434 4.34437 4.37320 4.54937 4.56664 4.76641 4.80661 4.83995 4.87560 5.01023 5.17496 5.30619 5.52250 5.73274 6.17855 6.31575 6.56805 7.00475 7.40389 8.94519 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.012245 C = 0.010276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.043894 B = 2286.156961 C = 2724.257182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.078 3.922 4 C 0.050 3.950 5 H 0.051 0.949 6 C -0.127 4.127 7 C -0.139 4.139 8 C 0.189 3.811 9 H -0.016 1.016 10 C -0.555 4.555 11 H 0.068 0.932 12 C 0.016 3.984 13 N -0.906 5.906 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.262 1.262 18 O -0.384 6.384 19 H 0.063 0.937 20 H 0.041 0.959 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.046 0.954 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 6.229 6.886 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C 0.002 3.998 4 C -0.008 4.008 5 H 0.069 0.931 6 C -0.165 4.165 7 C -0.177 4.177 8 C 0.134 3.866 9 H 0.002 0.998 10 C -0.592 4.592 11 H 0.086 0.914 12 C -0.186 4.186 13 N -0.544 5.544 14 Si 0.790 3.210 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.186 1.186 18 O -0.304 6.304 19 H 0.082 0.918 20 H 0.060 0.940 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.276 5.777 6.675 10.831 hybrid contribution 0.203 -0.076 -0.841 0.869 sum -6.073 5.701 5.833 10.169 Atomic orbital electron populations 1.22924 0.79569 1.03624 1.00887 1.87944 1.21637 1.29047 1.95542 1.22599 0.91532 0.84528 1.01190 1.23278 0.93693 0.95147 0.88718 0.93114 1.22977 0.95375 0.95813 1.02334 1.22929 0.97565 0.98665 0.98546 1.20254 0.80296 0.90934 0.95162 0.99788 1.21649 1.46573 0.97210 0.93793 0.91359 1.26088 0.93725 0.94671 1.04112 1.70226 1.45824 1.03171 1.35141 0.85452 0.78380 0.78554 0.78568 1.19290 1.21022 1.18598 1.89245 1.27950 1.79104 1.34108 0.91804 0.94030 0.88972 0.88923 0.93614 0.87668 0.90379 0.91077 0.91054 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 15 2 O -0.42 -16.39 10.70 -148.98 -1.59 -17.98 15 3 C 0.08 2.74 5.69 71.98 0.41 3.15 15 4 C 0.05 2.10 3.62 31.28 0.11 2.21 15 5 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 6 C -0.13 -4.37 6.59 31.90 0.21 -4.16 15 7 C -0.14 -5.77 6.63 31.58 0.21 -5.56 15 8 C 0.19 10.50 3.24 30.22 0.10 10.60 15 9 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 15 10 C -0.55 -32.72 8.78 25.60 0.22 -32.49 15 11 H 0.07 3.80 7.33 -2.91 -0.02 3.78 15 12 C 0.02 0.93 5.42 84.66 0.46 1.38 15 13 N -0.91 -58.05 12.95 21.45 0.28 -57.77 15 14 Si 0.97 45.51 29.54 68.60 2.03 47.54 15 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 15 18 O -0.38 -21.79 10.44 -148.98 -1.56 -23.35 15 19 H 0.06 1.30 8.14 -2.38 -0.02 1.28 15 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.08 2.53 8.06 -2.39 -0.02 2.51 15 26 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.07 2.88 7.40 -2.39 -0.02 2.86 15 28 H 0.26 15.70 8.31 -92.70 -0.77 14.93 15 Total: -1.00 -73.54 240.30 3.24 -70.30 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.12 Total: 4.20 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 2.97 Total: -22.94 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.28 Total: -57.77 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -3.15 Total: -41.33 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.54 3.24 -70.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.921 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds