Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99969 * 2 1 4 4 C 1.53001 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.27639 * 304.36101 * 4 3 2 6 6 C 1.54947 * 110.39721 * 182.21522 * 4 3 2 7 7 C 1.55310 * 100.94399 * 204.59770 * 6 4 3 8 8 C 1.54376 * 102.25097 * 34.13221 * 7 6 4 9 9 H 1.09005 * 109.90820 * 98.20110 * 8 7 6 10 10 C 1.50702 * 109.82728 * 219.12824 * 8 7 6 11 11 H 1.08002 * 120.00299 * 359.59348 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.30907 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 O 1.43235 * 107.59255 * 338.64306 * 8 7 6 19 19 H 1.09003 * 109.47395 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47030 * 300.00391 * 1 2 3 21 21 H 1.09002 * 109.46931 * 59.99910 * 1 2 3 22 22 H 1.08993 * 109.47519 * 60.00062 * 3 2 1 23 23 H 1.09002 * 109.47212 * 299.99467 * 3 2 1 24 24 H 1.09007 * 111.12103 * 322.51793 * 6 4 3 25 25 H 1.08995 * 111.12711 * 86.63575 * 6 4 3 26 26 H 1.08996 * 110.84239 * 275.94186 * 7 6 4 27 27 H 1.09001 * 110.84550 * 152.32144 * 7 6 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8661 0.5796 0.8450 6 6 4.1884 2.5886 0.0568 7 6 5.5722 2.2961 -0.5848 8 6 5.2263 1.2144 -1.6305 9 1 5.1155 1.6709 -2.6141 10 6 6.3163 0.1744 -1.6697 11 1 7.1766 0.2691 -1.0238 12 6 6.2123 -0.9013 -2.5261 13 7 5.1646 -1.0167 -3.3126 14 14 7.5596 -2.1944 -2.5691 15 1 7.6922 -2.8160 -1.2270 16 1 7.2120 -3.2384 -3.5665 17 1 8.8459 -1.5568 -2.9486 18 8 3.9905 0.6084 -1.2341 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.6886 1.8463 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.6243 3.3081 -0.5368 25 1 4.2963 2.9308 1.0860 26 1 6.2699 1.9090 0.1577 27 1 5.9724 3.1880 -1.0671 28 1 5.0917 -1.7732 -3.9154 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306268890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = -96.824087 kcal Electronic energy + Delta-G solvation = -11764.217652 eV Core-core repulsion = 9587.344032 eV Total energy + Delta-G solvation = -2176.873619 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.36698 -36.84451 -32.55488 -30.87198 -29.87991 -26.77925 -25.30495 -23.04303 -20.38165 -20.01776 -16.47040 -16.08671 -15.71936 -15.19001 -14.63701 -14.31275 -13.69282 -12.80895 -12.41530 -12.00517 -11.79990 -11.59772 -10.90588 -10.81256 -10.60848 -10.44769 -10.27098 -10.09935 -9.67869 -9.28742 -9.08413 -8.43256 -7.74005 -5.88393 -4.02594 3.38569 3.43088 3.45248 4.21791 4.51035 4.99731 5.42861 5.47082 5.53013 5.58801 5.67832 5.78085 5.86042 5.89315 5.94949 6.25383 6.47078 6.52671 6.68460 6.77573 6.88833 7.63478 7.71683 7.97335 8.37091 8.70652 9.14506 9.68665 11.18275 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042638 B = 0.012452 C = 0.010311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.533014 B = 2248.142526 C = 2714.932819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.068 3.932 4 C 0.078 3.922 5 H 0.059 0.941 6 C -0.151 4.151 7 C -0.143 4.143 8 C 0.203 3.797 9 H 0.037 0.963 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.079 3.921 13 N -0.861 5.861 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 O -0.347 6.347 19 H 0.081 0.919 20 H 0.032 0.968 21 H 0.037 0.963 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 5.240 5.993 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.009 4.009 4 C 0.019 3.981 5 H 0.076 0.924 6 C -0.189 4.189 7 C -0.181 4.181 8 C 0.147 3.853 9 H 0.055 0.945 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.127 4.127 13 N -0.497 5.497 14 Si 0.717 3.283 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 O -0.266 6.266 19 H 0.099 0.901 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.684 4.805 5.720 9.387 hybrid contribution 0.542 -0.346 0.109 0.653 sum -5.142 4.459 5.829 8.961 Atomic orbital electron populations 1.22679 0.82438 1.02222 0.99160 1.88043 1.18356 1.27867 1.95135 1.22768 0.94372 0.84610 0.99137 1.22696 0.90576 0.92754 0.92114 0.92359 1.23204 0.98023 0.97174 1.00465 1.23194 0.95426 0.99738 0.99749 1.20321 0.82852 0.89900 0.92180 0.94484 1.21350 1.04778 1.09301 1.23062 0.92412 1.25059 0.95140 0.97696 0.94781 1.70035 1.27526 1.29664 1.22509 0.86730 0.82222 0.81484 0.77877 1.20159 1.21221 1.20235 1.88850 1.40471 1.62247 1.35039 0.90086 0.94909 0.94448 0.93663 0.93249 0.91531 0.91616 0.91502 0.92161 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 15 2 O -0.38 -7.59 10.69 -36.86 -0.39 -7.98 15 3 C 0.07 1.25 5.65 37.16 0.21 1.46 15 4 C 0.08 1.68 3.72 -25.70 -0.10 1.58 15 5 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 6 C -0.15 -2.73 6.57 -24.48 -0.16 -2.89 15 7 C -0.14 -3.02 6.53 -24.79 -0.16 -3.18 15 8 C 0.20 5.45 3.36 -27.16 -0.09 5.36 15 9 H 0.04 1.07 8.14 -51.93 -0.42 0.64 15 10 C -0.55 -15.95 8.75 -34.44 -0.30 -16.26 15 11 H 0.06 1.62 7.52 -52.49 -0.39 1.23 15 12 C 0.08 2.34 5.41 -17.82 -0.10 2.24 15 13 N -0.86 -26.78 12.91 55.43 0.72 -26.06 15 14 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 15 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 18 O -0.35 -9.58 10.17 -36.86 -0.38 -9.96 15 19 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 20 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.07 1.11 8.06 -51.93 -0.42 0.69 15 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.07 1.40 7.66 -51.93 -0.40 1.00 15 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.26 7.64 8.31 -40.82 -0.34 7.31 15 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -33.08 240.47 -5.19 -38.26 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -4.15 Total: -4.90 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 0.42 Total: -10.11 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.72 Total: -26.06 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.77 Total: -17.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.08 -5.19 -38.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.563 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds