Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99969 * 2 1 4 4 C 1.53001 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.27639 * 304.36101 * 4 3 2 6 6 C 1.54947 * 110.39721 * 182.21522 * 4 3 2 7 7 C 1.55310 * 100.94399 * 204.59770 * 6 4 3 8 8 C 1.54376 * 102.25097 * 34.13221 * 7 6 4 9 9 H 1.09005 * 109.90820 * 98.20110 * 8 7 6 10 10 C 1.50702 * 109.82728 * 219.12824 * 8 7 6 11 11 H 1.08002 * 120.00299 * 359.59348 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.30907 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 O 1.43235 * 107.59255 * 338.64306 * 8 7 6 19 19 H 1.09003 * 109.47395 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47030 * 300.00391 * 1 2 3 21 21 H 1.09002 * 109.46931 * 59.99910 * 1 2 3 22 22 H 1.08993 * 109.47519 * 60.00062 * 3 2 1 23 23 H 1.09002 * 109.47212 * 299.99467 * 3 2 1 24 24 H 1.09007 * 111.12103 * 322.51793 * 6 4 3 25 25 H 1.08995 * 111.12711 * 86.63575 * 6 4 3 26 26 H 1.08996 * 110.84239 * 275.94186 * 7 6 4 27 27 H 1.09001 * 110.84550 * 152.32144 * 7 6 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8661 0.5796 0.8450 6 6 4.1884 2.5886 0.0568 7 6 5.5722 2.2961 -0.5848 8 6 5.2263 1.2144 -1.6305 9 1 5.1155 1.6709 -2.6141 10 6 6.3163 0.1744 -1.6697 11 1 7.1766 0.2691 -1.0238 12 6 6.2123 -0.9013 -2.5261 13 7 5.1646 -1.0167 -3.3126 14 14 7.5596 -2.1944 -2.5691 15 1 7.6922 -2.8160 -1.2270 16 1 7.2120 -3.2384 -3.5665 17 1 8.8459 -1.5568 -2.9486 18 8 3.9905 0.6084 -1.2341 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.6886 1.8463 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.6243 3.3081 -0.5368 25 1 4.2963 2.9308 1.0860 26 1 6.2699 1.9090 0.1577 27 1 5.9724 3.1880 -1.0671 28 1 5.0917 -1.7732 -3.9154 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = -120.872291 kcal Electronic energy + Delta-G solvation = -11765.260460 eV Core-core repulsion = 9587.344032 eV Total energy + Delta-G solvation = -2177.916428 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.09140 -38.34750 -34.71140 -32.65154 -31.62605 -28.41168 -26.88283 -24.80290 -22.04652 -21.85206 -18.59047 -17.69601 -17.13492 -16.84121 -16.48225 -15.92699 -15.36070 -14.73246 -13.99139 -13.74008 -13.49806 -13.11376 -12.75966 -12.41048 -12.31295 -12.16842 -12.12386 -11.76638 -11.45202 -11.08624 -10.66905 -10.55108 -9.78211 -8.10668 -6.32991 1.39030 1.43120 1.50461 2.41983 2.90067 3.08687 3.56863 3.91516 4.10190 4.25331 4.35042 4.40544 4.56160 4.57421 4.71495 4.80897 4.82960 4.93953 4.97281 5.16003 5.28710 5.62368 5.76925 6.20382 6.34282 6.62950 7.09855 7.44536 8.96307 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042638 B = 0.012452 C = 0.010311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.533014 B = 2248.142526 C = 2714.932819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.072 3.928 4 C 0.060 3.940 5 H 0.045 0.955 6 C -0.131 4.131 7 C -0.137 4.137 8 C 0.191 3.809 9 H 0.002 0.998 10 C -0.568 4.568 11 H 0.062 0.938 12 C 0.019 3.981 13 N -0.904 5.904 14 Si 0.962 3.038 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.261 1.261 18 O -0.389 6.389 19 H 0.090 0.910 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 6.039 7.448 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.004 4.004 4 C 0.001 3.999 5 H 0.063 0.937 6 C -0.169 4.169 7 C -0.175 4.175 8 C 0.135 3.865 9 H 0.020 0.980 10 C -0.606 4.606 11 H 0.080 0.920 12 C -0.183 4.183 13 N -0.542 5.542 14 Si 0.786 3.214 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.186 1.186 18 O -0.309 6.309 19 H 0.108 0.892 20 H 0.081 0.919 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.688 5.622 7.191 10.755 hybrid contribution 0.471 -0.574 -0.312 0.806 sum -5.217 5.048 6.879 10.001 Atomic orbital electron populations 1.22919 0.79710 1.03521 1.00869 1.87973 1.21509 1.29123 1.95513 1.22766 0.92088 0.84495 1.01075 1.23070 0.93115 0.94374 0.89298 0.93664 1.23151 0.95436 0.95373 1.02922 1.23077 0.97453 0.98563 0.98359 1.20270 0.82625 0.91003 0.92570 0.98036 1.21847 1.05712 1.10074 1.22931 0.91982 1.26010 0.97655 1.00219 0.94387 1.70198 1.29868 1.30510 1.23582 0.85590 0.79429 0.78441 0.77972 1.19643 1.20855 1.18603 1.88757 1.40630 1.63751 1.37796 0.89181 0.91912 0.93874 0.89261 0.93427 0.89708 0.87537 0.91543 0.90054 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 15 2 O -0.42 -16.71 10.69 -147.42 -1.58 -18.28 15 3 C 0.07 2.53 5.65 71.98 0.41 2.94 15 4 C 0.06 2.52 3.72 31.26 0.12 2.64 15 5 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 6 C -0.13 -4.37 6.57 32.05 0.21 -4.16 15 7 C -0.14 -5.58 6.53 31.85 0.21 -5.37 15 8 C 0.19 10.48 3.36 30.32 0.10 10.58 15 9 H 0.00 0.11 8.14 -2.38 -0.02 0.09 15 10 C -0.57 -33.70 8.75 25.60 0.22 -33.47 15 11 H 0.06 3.50 7.52 -2.91 -0.02 3.48 15 12 C 0.02 1.14 5.41 84.66 0.46 1.59 15 13 N -0.90 -57.98 12.91 21.45 0.28 -57.71 15 14 Si 0.96 46.06 29.54 68.60 2.03 48.09 15 15 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 15 18 O -0.39 -22.00 10.17 -147.42 -1.50 -23.50 15 19 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.04 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.08 2.53 8.06 -2.38 -0.02 2.51 15 25 H 0.11 2.71 8.14 -2.39 -0.02 2.70 15 26 H 0.07 2.68 7.66 -2.39 -0.02 2.66 15 27 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.26 15.73 8.31 -92.70 -0.77 14.96 15 Total: -1.00 -73.83 240.47 3.32 -70.51 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.12 Total: 4.20 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 2.97 Total: -23.31 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -3.08 Total: -41.78 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.83 3.32 -70.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.359 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds