Wall clock time and date at job start Mon Mar 30 2020 01:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.50707 * 109.47394 * 47.83186 * 3 2 1 5 5 C 1.37643 * 120.12639 * 265.30938 * 4 3 2 6 6 C 1.38615 * 120.24281 * 180.31829 * 5 4 3 7 7 C 1.38658 * 120.50051 * 359.66907 * 6 5 4 8 8 C 1.37593 * 120.25264 * 0.02562 * 7 6 5 9 9 C 1.40688 * 120.12508 * 84.99697 * 4 3 2 10 10 C 1.41401 * 120.24844 * 359.97438 * 9 4 3 11 11 H 1.07999 * 119.99289 * 334.28466 * 10 9 4 12 12 C 1.39942 * 120.00269 * 154.28541 * 10 9 4 13 13 N 1.30824 * 119.99991 * 334.60087 * 12 10 9 14 14 Si 1.86801 * 119.99827 * 154.60275 * 12 10 9 15 15 H 1.48498 * 109.46880 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47296 * 299.99884 * 14 12 10 17 17 H 1.48502 * 109.47178 * 60.00079 * 14 12 10 18 18 H 4.43227 * 5.59118 * 180.02562 * 4 1 2 19 19 H 1.09001 * 109.46869 * 287.83321 * 3 2 1 20 20 H 1.08991 * 109.47185 * 167.83412 * 3 2 1 21 21 H 1.07998 * 119.87840 * 0.02562 * 5 4 3 22 22 H 1.07996 * 119.74749 * 179.68975 * 6 5 4 23 23 H 1.08000 * 119.87393 * 180.02562 * 7 6 5 24 24 H 1.07996 * 120.12941 * 180.02562 * 8 7 6 25 25 H 0.96998 * 120.00189 * 354.17723 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1488 -0.9529 -1.0531 5 6 3.4715 -2.2477 -0.7153 6 6 3.9405 -3.1249 -1.6807 7 6 4.0836 -2.7122 -2.9966 8 6 3.7611 -1.4244 -3.3582 9 6 3.2840 -0.5251 -2.3865 10 6 2.9488 0.8006 -2.7466 11 1 2.2295 1.3537 -2.1609 12 6 3.5490 1.3958 -3.8619 13 7 4.7216 0.9847 -4.2710 14 14 2.6757 2.7773 -4.7665 15 1 3.5153 3.2327 -5.9036 16 1 1.3719 2.2862 -5.2802 17 1 2.4456 3.9109 -3.8352 18 1 -1.0498 0.0000 -0.0003 19 1 3.0094 -0.3139 0.9783 20 1 3.0089 1.0053 -0.2166 21 1 3.3634 -2.5799 0.3066 22 1 4.1960 -4.1375 -1.4058 23 1 4.4495 -3.4043 -3.7407 24 1 3.8730 -1.1052 -4.3839 25 1 5.2127 0.3273 -3.7537 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306355132.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:37 Heat of formation + Delta-G solvation = 38.082922 kcal Electronic energy + Delta-G solvation = -10475.101106 eV Core-core repulsion = 8611.386413 eV Total energy + Delta-G solvation = -1863.714693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.84036 -35.79667 -35.25309 -32.08314 -31.13177 -28.10531 -26.70490 -22.84699 -22.05866 -19.76540 -18.79921 -16.83287 -16.36104 -16.04762 -15.50623 -15.03312 -14.28402 -13.97907 -13.77431 -13.67366 -12.99117 -12.61869 -12.35424 -11.98048 -11.81032 -11.39623 -10.92489 -10.90770 -10.78840 -9.49522 -9.48667 -9.09756 -6.43231 0.86645 0.94558 1.49041 1.63117 1.77801 2.01991 2.04344 2.32223 2.68804 3.48264 3.83947 4.31026 4.35231 4.54370 4.61556 4.83836 4.96406 5.08615 5.23303 5.29022 5.48477 5.76374 5.83411 5.96502 6.02987 6.26950 6.42015 6.79291 6.86092 6.98167 8.06104 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.030767 B = 0.017035 C = 0.011908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.834548 B = 1643.285478 C = 2350.795343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.195 4.195 3 C 0.049 3.951 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.249 4.249 7 C -0.094 4.094 8 C -0.243 4.243 9 C 0.076 3.924 10 C -0.545 4.545 11 H 0.072 0.928 12 C 0.004 3.996 13 N -0.818 5.818 14 Si 1.110 2.890 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.257 1.257 18 H 0.249 0.751 19 H 0.097 0.903 20 H 0.077 0.923 21 H 0.122 0.878 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -0.285 3.877 5.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.196 4.196 3 C 0.012 3.988 4 C -0.211 4.211 5 C -0.098 4.098 6 C -0.268 4.268 7 C -0.112 4.112 8 C -0.263 4.263 9 C 0.074 3.926 10 C -0.573 4.573 11 H 0.091 0.909 12 C -0.212 4.212 13 N -0.442 5.442 14 Si 0.928 3.072 15 H -0.195 1.195 16 H -0.193 1.193 17 H -0.181 1.181 18 H 0.265 0.735 19 H 0.115 0.885 20 H 0.095 0.905 21 H 0.140 0.860 22 H 0.140 0.860 23 H 0.131 0.869 24 H 0.104 0.896 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.780 0.698 2.560 4.619 hybrid contribution 0.002 -1.213 1.117 1.649 sum -3.778 -0.515 3.677 5.297 Atomic orbital electron populations 1.25555 0.96628 1.01183 1.01294 1.23704 0.95325 1.00375 1.00145 1.17321 0.84652 0.99221 0.97577 1.19792 1.11700 0.95987 0.93576 1.20859 0.97447 0.92691 0.98833 1.20757 1.12411 1.00143 0.93443 1.20942 0.98546 0.95086 0.96657 1.21170 1.12135 0.94957 0.98006 1.17856 0.89877 0.93619 0.91258 1.20674 1.24314 0.98981 1.13346 0.90943 1.28313 0.94714 1.02767 0.95431 1.70560 1.10228 1.24853 1.38523 0.83092 0.75371 0.72719 0.76047 1.19500 1.19254 1.18148 0.73517 0.88506 0.90514 0.86036 0.85996 0.86934 0.89577 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.99 19.25 74.32 1.43 -6.56 15 2 C -0.20 -7.93 12.92 31.12 0.40 -7.52 15 3 C 0.05 2.02 5.20 28.04 0.15 2.17 15 4 C -0.21 -10.02 5.15 -19.40 -0.10 -10.12 15 5 C -0.08 -3.48 9.66 22.22 0.21 -3.26 15 6 C -0.25 -10.65 10.05 22.46 0.23 -10.42 15 7 C -0.09 -4.36 10.02 22.22 0.22 -4.14 15 8 C -0.24 -12.89 7.95 22.73 0.18 -12.71 15 9 C 0.08 4.12 5.30 -21.29 -0.11 4.01 15 10 C -0.54 -29.49 8.07 23.46 0.19 -29.30 15 11 H 0.07 3.88 6.71 -2.91 -0.02 3.86 15 12 C 0.00 0.21 4.94 85.26 0.42 0.63 15 13 N -0.82 -44.81 12.31 21.83 0.27 -44.54 15 14 Si 1.11 44.15 30.00 68.60 2.06 46.21 15 15 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15 16 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 17 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 18 H 0.25 6.05 7.80 -4.43 -0.03 6.01 15 19 H 0.10 3.40 8.05 -2.39 -0.02 3.38 15 20 H 0.08 3.34 7.06 -2.39 -0.02 3.33 15 21 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 22 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15 23 H 0.11 4.56 8.06 -2.91 -0.02 4.54 15 24 H 0.09 4.79 6.49 -2.91 -0.02 4.77 15 25 H 0.28 16.15 6.68 -92.71 -0.62 15.53 15 Total: -1.00 -60.27 229.12 6.87 -53.40 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.32 Total: 22.18 kcal Atomic # 6 Polarization: -80.46 SS G_CDS: 3.22 Total: -77.24 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.27 Total: -44.54 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.06 Total: 46.21 kcal Total: -60.27 6.87 -53.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306355132.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.480 kcal (2) G-P(sol) polarization free energy of solvation -60.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds