Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 110.56666 * 2 1 4 4 C 1.54484 * 110.50737 * 237.32368 * 2 1 3 5 5 O 1.44426 * 104.80278 * 265.33338 * 4 2 1 6 6 C 1.44427 * 105.27454 * 319.49295 * 5 4 2 7 7 C 1.54481 * 104.80504 * 40.50767 * 6 5 4 8 8 O 1.42897 * 110.62716 * 217.32011 * 7 6 5 9 9 C 1.50703 * 110.50714 * 94.66899 * 7 6 5 10 10 H 1.08002 * 119.99685 * 245.35307 * 9 7 6 11 11 C 1.37877 * 120.00216 * 65.36120 * 9 7 6 12 12 N 1.31516 * 120.00069 * 179.97438 * 11 9 7 13 13 Si 1.86800 * 119.99806 * 359.97438 * 11 9 7 14 14 H 1.48503 * 109.46845 * 90.00621 * 13 11 9 15 15 H 1.48503 * 109.47399 * 210.00111 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00717 * 13 11 9 17 17 H 1.09000 * 109.46783 * 297.32134 * 1 2 3 18 18 H 1.08997 * 109.46692 * 57.31540 * 1 2 3 19 19 H 1.08993 * 109.47139 * 177.31901 * 1 2 3 20 20 H 1.09005 * 109.47133 * 182.68182 * 3 2 1 21 21 H 1.09004 * 109.47733 * 302.67961 * 3 2 1 22 22 H 1.09003 * 109.47505 * 62.67706 * 3 2 1 23 23 H 1.09002 * 110.37100 * 24.16583 * 4 2 1 24 24 H 1.08999 * 110.37308 * 146.50312 * 4 2 1 25 25 H 1.09003 * 110.37087 * 281.67768 * 6 5 4 26 26 H 1.09000 * 110.37126 * 159.34527 * 6 5 4 27 27 H 0.96701 * 114.00345 * 296.61280 * 8 7 6 28 28 H 0.97000 * 119.99667 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0676 1.4324 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3070 -2.1177 -0.7240 6 6 2.8757 -1.9423 0.5919 7 6 2.0714 -0.7814 1.2180 8 8 2.9218 0.0510 2.0092 9 6 0.9345 -1.3155 2.0506 10 1 -0.0868 -1.1257 1.7550 11 6 1.1981 -2.0462 3.1897 12 7 0.2059 -2.5118 3.9165 13 14 2.9646 -2.3747 3.7006 14 1 3.4331 -1.2833 4.5920 15 1 3.0382 -3.6699 4.4233 16 1 3.8267 -2.4320 2.4929 17 1 -0.3633 0.4717 0.9130 18 1 -0.3632 0.5550 -0.8649 19 1 -0.3633 -1.0265 -0.0481 20 1 3.1563 1.4120 -0.0481 21 1 1.6757 1.9676 -0.8650 22 1 1.7536 1.9384 0.9130 23 1 1.3310 -0.7973 -2.0178 24 1 3.0023 -0.3372 -1.5703 25 1 3.9302 -1.6764 0.5172 26 1 2.7535 -2.8504 1.1823 27 1 3.3128 -0.3976 2.7714 28 1 0.3914 -3.0262 4.7177 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306428998.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = -79.435668 kcal Electronic energy + Delta-G solvation = -12577.547939 eV Core-core repulsion = 10401.428338 eV Total energy + Delta-G solvation = -2176.119601 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.40399 -35.37706 -33.37436 -32.41273 -28.63189 -26.79171 -25.30548 -24.40961 -21.71836 -18.31392 -16.97219 -16.32755 -15.48565 -14.71278 -14.37355 -13.89873 -13.04474 -12.99644 -12.50466 -12.21161 -11.79172 -11.65127 -11.37111 -11.09813 -10.64426 -10.42829 -10.17225 -9.92230 -9.62768 -9.20772 -9.01246 -8.74652 -8.35117 -6.25002 -4.27649 3.07038 3.09612 3.22315 4.16687 4.64398 5.04355 5.32205 5.49517 5.55460 5.78685 6.01816 6.08985 6.17316 6.32189 6.34280 6.43706 6.54907 6.66962 6.75857 6.89471 7.03418 7.18235 7.48493 7.58657 8.29816 8.67276 8.81097 9.33704 10.86862 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.045435 B = 0.019343 C = 0.018342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.122608 B = 1447.229733 C = 1526.177462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.118 4.118 4 C 0.052 3.948 5 O -0.373 6.373 6 C 0.018 3.982 7 C 0.197 3.803 8 O -0.568 6.568 9 C -0.533 4.533 10 H 0.101 0.899 11 C 0.075 3.925 12 N -0.884 5.884 13 Si 0.845 3.155 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.247 1.247 17 H 0.065 0.935 18 H 0.032 0.968 19 H 0.065 0.935 20 H 0.050 0.950 21 H 0.039 0.961 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.347 0.653 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 3.674 -5.860 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.176 4.176 4 C -0.025 4.025 5 O -0.292 6.292 6 C -0.059 4.059 7 C 0.157 3.843 8 O -0.377 6.377 9 C -0.570 4.570 10 H 0.119 0.881 11 C -0.128 4.128 12 N -0.522 5.522 13 Si 0.673 3.327 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.172 1.172 17 H 0.084 0.916 18 H 0.051 0.949 19 H 0.084 0.916 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.197 0.803 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.162 3.794 -6.257 8.418 hybrid contribution 1.167 -0.593 1.060 1.685 sum 5.329 3.200 -5.196 8.102 Atomic orbital electron populations 1.21764 0.93395 1.02080 1.00150 1.21661 0.96742 0.95405 0.93940 1.21488 1.00289 0.95029 1.00757 1.23480 0.98789 0.83886 0.96395 1.89042 1.83351 1.25308 1.31477 1.24793 0.95172 1.01906 0.83992 1.20502 0.88307 0.86024 0.89454 1.86505 1.66585 1.42681 1.41922 1.21745 0.94639 1.32866 1.07766 0.88093 1.25063 0.96673 0.94881 0.96214 1.69863 1.30902 1.35520 1.15892 0.87712 0.86549 0.78579 0.79866 1.19792 1.21075 1.17225 0.91620 0.94902 0.91558 0.93042 0.94169 0.91927 0.89978 0.93404 0.94488 0.89139 0.80296 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 6.95 37.16 0.26 -2.08 15 2 C -0.08 -1.59 1.05 -152.94 -0.16 -1.75 15 3 C -0.12 -2.15 7.54 37.15 0.28 -1.87 15 4 C 0.05 0.98 6.73 37.94 0.26 1.24 15 5 O -0.37 -8.37 11.65 -35.23 -0.41 -8.78 15 6 C 0.02 0.43 4.94 37.93 0.19 0.61 15 7 C 0.20 4.69 1.01 -90.21 -0.09 4.60 15 8 O -0.57 -13.40 11.28 -35.23 -0.40 -13.80 15 9 C -0.53 -14.55 8.02 -34.44 -0.28 -14.82 15 10 H 0.10 2.91 5.04 -52.49 -0.26 2.64 15 11 C 0.07 2.08 5.38 -17.82 -0.10 1.99 15 12 N -0.88 -26.10 13.96 55.43 0.77 -25.33 15 13 Si 0.84 19.68 23.19 -169.99 -3.94 15.74 15 14 H -0.27 -6.13 7.04 56.52 0.40 -5.73 15 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.25 -5.36 4.66 56.52 0.26 -5.10 15 17 H 0.06 1.40 7.17 -51.93 -0.37 1.03 15 18 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.07 1.43 7.17 -51.93 -0.37 1.06 15 20 H 0.05 0.92 7.86 -51.93 -0.41 0.51 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.06 1.20 7.91 -51.93 -0.41 0.79 15 23 H 0.08 1.37 7.87 -51.93 -0.41 0.96 15 24 H 0.05 0.83 7.83 -51.93 -0.41 0.42 15 25 H 0.04 0.80 7.94 -51.93 -0.41 0.39 15 26 H 0.09 2.17 5.27 -51.93 -0.27 1.89 15 27 H 0.35 7.91 4.31 45.56 0.20 8.11 15 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 213.49 15.07 3.22 3.22 Total: -1.00 -29.35 213.49 -3.66 -33.01 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.26 Total: 8.04 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 0.36 Total: -12.10 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.77 Total: -25.33 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.81 Total: -22.58 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -3.94 Total: 15.74 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -29.35 -3.66 -33.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428998.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.427 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds