Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.56286 * 2 1 4 4 C 1.54799 * 110.55576 * 237.15911 * 2 1 3 5 5 O 1.44426 * 104.80030 * 217.33356 * 4 2 1 6 6 C 1.44427 * 105.27614 * 40.59222 * 5 4 2 7 7 C 1.54478 * 104.80284 * 319.48505 * 6 5 4 8 8 O 1.42898 * 110.51588 * 142.62650 * 7 6 5 9 9 C 1.50702 * 110.51222 * 265.20189 * 7 6 5 10 10 H 1.07995 * 120.00415 * 114.90278 * 9 7 6 11 11 C 1.37876 * 119.99689 * 294.90533 * 9 7 6 12 12 N 1.31517 * 119.99956 * 2.87819 * 11 9 7 13 13 Si 1.86804 * 120.00140 * 182.88221 * 11 9 7 14 14 H 1.48502 * 109.46888 * 84.98582 * 13 11 9 15 15 H 1.48501 * 109.46942 * 204.98566 * 13 11 9 16 16 H 1.48493 * 109.46713 * 324.98565 * 13 11 9 17 17 H 1.08999 * 109.47402 * 297.32000 * 1 2 3 18 18 H 1.08999 * 109.46944 * 57.32509 * 1 2 3 19 19 H 1.09007 * 109.46934 * 177.32420 * 1 2 3 20 20 H 1.09004 * 109.47341 * 182.68117 * 3 2 1 21 21 H 1.09003 * 109.47072 * 302.67676 * 3 2 1 22 22 H 1.08992 * 109.47654 * 62.67556 * 3 2 1 23 23 H 1.08995 * 110.30745 * 98.53520 * 4 2 1 24 24 H 1.09000 * 110.53226 * 336.24420 * 4 2 1 25 25 H 1.08997 * 110.37143 * 200.65729 * 6 5 4 26 26 H 1.08999 * 110.46957 * 78.35859 * 6 5 4 27 27 H 0.96701 * 114.00224 * 56.61821 * 8 7 6 28 28 H 0.97003 * 120.00252 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0736 -0.7860 -1.2178 5 8 3.2427 -1.4734 -0.7213 6 6 2.8780 -1.9422 0.5952 7 6 2.0714 -0.7814 1.2182 8 8 0.9933 -1.2877 2.0077 9 6 2.9681 0.0967 2.0525 10 1 3.1462 1.1206 1.7589 11 6 3.5611 -0.4073 3.1906 12 7 3.3900 -1.6697 3.5174 13 14 4.6076 0.7030 4.2685 14 1 3.7338 1.4358 5.2197 15 1 5.5837 -0.1203 5.0266 16 1 5.3369 1.6758 3.4161 17 1 -0.3634 0.4716 0.9130 18 1 -0.3633 0.5548 -0.8650 19 1 -0.3633 -1.0266 -0.0480 20 1 3.1562 1.4121 -0.0481 21 1 1.6755 1.9675 -0.8650 22 1 1.7534 1.9384 0.9129 23 1 2.3484 -0.0999 -2.0188 24 1 1.3330 -1.5035 -1.5711 25 1 3.7708 -2.1442 1.1869 26 1 2.2605 -2.8376 0.5235 27 1 1.2698 -1.8939 2.7085 28 1 3.8075 -2.0244 4.3179 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306428999.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = -118.917580 kcal Electronic energy + Delta-G solvation = -12504.911386 eV Core-core repulsion = 10327.079721 eV Total energy + Delta-G solvation = -2177.831665 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.81967 -36.77967 -34.85879 -34.17753 -29.86242 -28.30050 -26.76663 -26.39874 -23.04636 -19.94763 -18.74584 -17.49326 -17.04561 -16.20025 -15.91497 -15.38178 -15.04844 -14.34458 -13.94401 -13.74284 -13.12711 -13.08800 -12.97231 -12.65495 -12.47760 -12.22251 -11.93806 -11.55989 -11.40585 -10.86602 -10.76564 -10.37978 -9.99223 -8.20537 -6.31657 1.40776 1.42438 1.50921 2.40038 3.01285 3.31183 3.84225 4.11263 4.11668 4.39384 4.51394 4.66885 4.77701 4.88066 4.92195 5.01834 5.12980 5.16023 5.31297 5.46331 5.55243 5.63669 5.77272 6.05996 6.26141 6.72663 7.36188 7.43961 8.85813 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046746 B = 0.016829 C = 0.016183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.843520 B = 1663.381431 C = 1729.839346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.110 4.110 4 C 0.051 3.949 5 O -0.399 6.399 6 C 0.040 3.960 7 C 0.220 3.780 8 O -0.584 6.584 9 C -0.549 4.549 10 H 0.077 0.923 11 C 0.021 3.979 12 N -0.920 5.920 13 Si 0.957 3.043 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 H 0.043 0.957 18 H 0.071 0.929 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.372 0.628 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 2.880 -5.310 6.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.167 4.167 4 C -0.026 4.026 5 O -0.319 6.319 6 C -0.038 4.038 7 C 0.180 3.820 8 O -0.391 6.391 9 C -0.587 4.587 10 H 0.095 0.905 11 C -0.178 4.178 12 N -0.561 5.561 13 Si 0.783 3.217 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.195 1.195 17 H 0.062 0.938 18 H 0.090 0.910 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.221 0.779 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.884 3.100 -5.701 7.101 hybrid contribution 0.865 -0.246 1.447 1.704 sum -2.019 2.854 -4.254 5.506 Atomic orbital electron populations 1.21366 0.92821 1.01140 1.01045 1.21981 0.97010 0.96568 0.94071 1.21655 1.00195 0.93985 1.00862 1.23705 0.87607 0.94991 0.96269 1.88965 1.36621 1.74373 1.31891 1.23999 1.00513 0.96603 0.82655 1.20089 0.83841 0.89555 0.88536 1.86160 1.36262 1.67155 1.49556 1.22293 1.27924 0.99603 1.08834 0.90463 1.25754 0.97020 0.96265 0.98741 1.69727 1.46111 1.13873 1.26419 0.85583 0.78440 0.78920 0.78760 1.20255 1.20954 1.19529 0.93833 0.91041 0.93592 0.93624 0.91310 0.93382 0.87632 0.92042 0.90656 0.95138 0.77938 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.83 7.55 71.98 0.54 -3.29 15 2 C -0.10 -3.92 1.06 -51.05 -0.05 -3.97 15 3 C -0.11 -4.16 6.96 71.98 0.50 -3.66 15 4 C 0.05 1.91 6.75 72.60 0.49 2.40 15 5 O -0.40 -18.50 11.65 -148.98 -1.74 -20.24 15 6 C 0.04 1.97 6.49 72.48 0.47 2.44 15 7 C 0.22 10.90 1.04 -10.52 -0.01 10.89 15 8 O -0.58 -29.86 11.27 -148.98 -1.68 -31.54 15 9 C -0.55 -29.28 7.42 25.60 0.19 -29.09 15 10 H 0.08 4.03 4.80 -2.91 -0.01 4.01 15 11 C 0.02 1.13 5.08 84.65 0.43 1.56 15 12 N -0.92 -49.84 10.46 21.45 0.22 -49.62 15 13 Si 0.96 42.79 29.54 68.60 2.03 44.82 15 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 17 H 0.04 1.69 7.91 -2.39 -0.02 1.67 15 18 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.04 1.67 7.86 -2.38 -0.02 1.66 15 20 H 0.04 1.85 7.18 -2.39 -0.02 1.83 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.05 1.92 7.16 -2.39 -0.02 1.90 15 23 H 0.11 3.32 7.88 -2.39 -0.02 3.30 15 24 H 0.06 2.11 7.84 -2.39 -0.02 2.09 15 25 H 0.08 4.15 6.66 -2.39 -0.02 4.13 15 26 H 0.03 1.48 8.08 -2.39 -0.02 1.46 15 27 H 0.37 19.62 7.31 -74.06 -0.54 19.08 15 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -57.47 223.87 2.01 -55.46 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.61 Total: 23.82 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 2.56 Total: -22.72 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.22 Total: -49.62 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -3.42 Total: -51.77 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -57.47 2.01 -55.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306428999.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.457 kcal (2) G-P(sol) polarization free energy of solvation -57.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds