Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.35346 * 123.77241 * 124.72772 * 12 9 7 14 14 S 1.72119 * 104.15416 * 179.89898 * 13 12 9 15 15 N 1.56507 * 95.88518 * 0.32017 * 14 13 12 16 16 N 1.27571 * 109.22524 * 359.80684 * 15 14 13 17 17 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 18 18 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 19 19 H 1.08001 * 127.92163 * 359.97224 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2303 -3.6446 -0.0015 13 6 2.2314 -4.6333 0.9228 14 16 3.5337 -5.6531 0.4467 15 7 3.9563 -4.8032 -0.7977 16 7 3.1845 -3.7923 -0.8978 17 1 -0.4850 -0.8401 -0.0004 18 1 0.9223 -2.5282 -1.9998 19 1 1.5666 -4.7552 1.7651 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306497190.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = 11.219392 kcal Electronic energy + Delta-G solvation = -9289.435847 eV Core-core repulsion = 7320.626778 eV Total energy + Delta-G solvation = -1968.809069 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.33800 -36.01208 -32.23292 -31.64994 -26.96839 -26.00628 -23.01397 -20.69795 -18.13397 -17.23970 -15.83419 -15.09538 -14.66975 -13.79857 -13.36016 -13.12872 -12.14924 -11.95053 -11.46879 -10.79879 -10.38666 -10.13992 -9.89552 -9.61854 -9.42906 -9.17198 -8.54822 -8.23696 -6.44188 -4.27892 0.70260 1.57933 2.15645 2.87304 3.41627 3.44442 3.62764 4.47574 4.72312 5.26063 5.48481 5.53068 5.87947 6.25787 7.08158 7.77618 8.29248 8.38555 8.76336 8.89149 9.54220 10.95494 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.069239 B = 0.012284 C = 0.011363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.300038 B = 2278.753538 C = 2463.562669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.037 3.963 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.637 4.637 8 H 0.055 0.945 9 C 0.289 3.711 10 H 0.073 0.927 11 O -0.573 6.573 12 C 0.040 3.960 13 C -0.292 4.292 14 S 0.355 5.645 15 N -0.295 5.295 16 N -0.217 5.217 17 H 0.283 0.717 18 H 0.364 0.636 19 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -8.527 2.742 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.675 4.675 8 H 0.073 0.927 9 C 0.228 3.772 10 H 0.091 0.909 11 O -0.378 6.378 12 C -0.104 4.104 13 C -0.448 4.448 14 S 0.490 5.510 15 N -0.274 5.274 16 N -0.086 5.086 17 H 0.095 0.905 18 H 0.211 0.789 19 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.022 -7.762 2.292 9.524 hybrid contribution -0.454 -0.844 0.293 1.002 sum 4.568 -8.606 2.585 10.080 Atomic orbital electron populations 1.70670 1.06844 1.32143 1.42630 1.25854 0.96414 1.02490 0.92471 0.83541 0.74907 0.75034 0.76741 1.20611 1.21410 1.21169 1.22296 0.94717 0.91178 1.59316 0.92692 1.18305 0.85226 0.87018 0.86672 0.90932 1.86474 1.38738 1.96094 1.16455 1.23961 0.96972 0.99171 0.90269 1.28107 1.07790 1.00743 1.08207 1.81044 1.19217 1.30174 1.20598 1.79010 1.24337 1.06868 1.17205 1.71146 1.02594 1.10686 1.24209 0.90536 0.78922 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.53 55.43 0.75 -25.67 13 2 C 0.04 1.03 5.40 -17.82 -0.10 0.94 13 3 Si 1.07 24.96 29.90 -169.99 -5.08 19.88 13 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 13 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 13 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 13 7 C -0.64 -17.73 8.67 -34.44 -0.30 -18.03 13 8 H 0.05 1.57 7.74 -52.49 -0.41 1.17 13 9 C 0.29 7.24 2.88 -29.03 -0.08 7.16 13 10 H 0.07 1.84 7.92 -51.93 -0.41 1.42 13 11 O -0.57 -14.49 12.01 -35.23 -0.42 -14.91 13 12 C 0.04 0.88 5.74 -83.66 -0.48 0.40 13 13 C -0.29 -5.06 11.31 29.70 0.34 -4.73 13 14 S 0.35 5.34 23.40 -107.50 -2.52 2.82 13 15 N -0.30 -5.80 12.54 60.35 0.76 -5.04 13 16 N -0.22 -4.88 11.58 32.45 0.38 -4.50 13 17 H 0.28 8.47 6.47 -40.82 -0.26 8.20 13 18 H 0.36 8.65 9.03 45.56 0.41 9.06 13 19 H 0.19 2.67 8.06 -52.49 -0.42 2.25 13 LS Contribution 197.50 15.07 2.98 2.98 Total: -1.00 -31.13 197.50 -3.67 -34.80 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.11 Total: 3.91 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.62 Total: -14.26 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 1.88 Total: -35.21 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.42 Total: -14.91 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -2.52 Total: 2.82 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -31.13 -3.67 -34.80 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306497190.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.020 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds