Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.35346 * 123.77241 * 124.72772 * 12 9 7 14 14 S 1.72119 * 104.15416 * 179.89898 * 13 12 9 15 15 N 1.56507 * 95.88518 * 0.32017 * 14 13 12 16 16 N 1.27571 * 109.22524 * 359.80684 * 15 14 13 17 17 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 18 18 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 19 19 H 1.08001 * 127.92163 * 359.97224 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2303 -3.6446 -0.0015 13 6 2.2314 -4.6333 0.9228 14 16 3.5337 -5.6531 0.4467 15 7 3.9563 -4.8032 -0.7977 16 7 3.1845 -3.7923 -0.8978 17 1 -0.4850 -0.8401 -0.0004 18 1 0.9223 -2.5282 -1.9998 19 1 1.5666 -4.7552 1.7651 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306497190.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = -13.751841 kcal Electronic energy + Delta-G solvation = -9290.518681 eV Core-core repulsion = 7320.626778 eV Total energy + Delta-G solvation = -1969.891903 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.86437 -37.95224 -34.35558 -33.23209 -28.78204 -27.65313 -25.03142 -22.22494 -19.86092 -19.15216 -17.52021 -16.63754 -16.24950 -15.68887 -15.27121 -14.93192 -14.21129 -13.48580 -12.93244 -12.62374 -12.38948 -11.93961 -11.77992 -11.05390 -10.91172 -10.67519 -10.63242 -10.22449 -8.65432 -6.49853 -0.69969 0.22945 0.78185 1.27276 1.53945 1.60984 1.81428 2.54616 3.10333 3.19726 3.91369 4.00271 4.16366 4.61207 5.13293 5.72204 6.07333 6.52405 6.90127 6.92975 7.40013 8.73104 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.069239 B = 0.012284 C = 0.011363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.300038 B = 2278.753538 C = 2463.562669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 1.115 2.885 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.644 4.644 8 H 0.041 0.959 9 C 0.287 3.713 10 H 0.065 0.935 11 O -0.582 6.582 12 C 0.004 3.996 13 C -0.292 4.292 14 S 0.495 5.505 15 N -0.339 5.339 16 N -0.261 5.261 17 H 0.270 0.730 18 H 0.367 0.633 19 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 -9.675 3.703 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.213 4.213 3 Si 0.936 3.064 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.682 4.682 8 H 0.060 0.940 9 C 0.227 3.773 10 H 0.082 0.918 11 O -0.387 6.387 12 C -0.141 4.141 13 C -0.448 4.448 14 S 0.629 5.371 15 N -0.318 5.318 16 N -0.129 5.129 17 H 0.081 0.919 18 H 0.214 0.786 19 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.071 -8.926 3.246 11.272 hybrid contribution -0.716 -0.730 0.076 1.025 sum 5.355 -9.656 3.323 11.531 Atomic orbital electron populations 1.70794 1.07666 1.31348 1.45063 1.27216 0.96498 1.06021 0.91562 0.82967 0.74162 0.71498 0.77740 1.20425 1.19550 1.20208 1.22545 0.94213 0.92894 1.58575 0.94050 1.18040 0.85551 0.87733 0.86019 0.91791 1.86417 1.39215 1.96253 1.16810 1.23465 0.97744 1.00178 0.92690 1.28559 1.08757 0.99888 1.07584 1.80497 1.14917 1.25622 1.16019 1.78545 1.25181 1.07516 1.20571 1.71166 1.03565 1.12460 1.25676 0.91913 0.78588 0.76073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.09 13.53 21.45 0.29 -54.80 13 2 C -0.01 -0.57 5.40 84.66 0.46 -0.12 13 3 Si 1.11 50.19 29.90 68.60 2.05 52.24 13 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 13 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 13 6 H -0.28 -11.94 7.11 99.48 0.71 -11.24 13 7 C -0.64 -36.33 8.67 25.60 0.22 -36.11 13 8 H 0.04 2.40 7.74 -2.91 -0.02 2.37 13 9 C 0.29 14.60 2.88 29.10 0.08 14.68 13 10 H 0.06 3.30 7.92 -2.39 -0.02 3.28 13 11 O -0.58 -30.10 12.01 -148.98 -1.79 -31.89 13 12 C 0.00 0.19 5.74 41.90 0.24 0.43 13 13 C -0.29 -9.31 11.31 67.15 0.76 -8.55 13 14 S 0.50 13.00 23.40 -56.49 -1.32 11.68 13 15 N -0.34 -12.71 12.54 37.02 0.46 -12.24 13 16 N -0.26 -11.64 11.58 -51.24 -0.59 -12.23 13 17 H 0.27 16.58 6.47 -92.71 -0.60 15.98 13 18 H 0.37 18.02 9.03 -74.06 -0.67 17.36 13 19 H 0.22 5.40 8.06 -2.91 -0.02 5.38 13 Total: -1.00 -67.72 197.50 1.65 -66.06 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.79 Total: 10.84 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 1.76 Total: -29.66 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: 0.16 Total: -79.27 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.79 Total: -31.89 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Atomic # 16 Polarization: 13.00 SS G_CDS: -1.32 Total: 11.68 kcal Total: -67.72 1.65 -66.06 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306497190.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.312 kcal (2) G-P(sol) polarization free energy of solvation -67.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds