Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.35339 * 123.76804 * 124.73107 * 12 9 7 14 14 S 1.72113 * 104.15455 * 179.89986 * 13 12 9 15 15 N 1.56510 * 95.88344 * 0.31988 * 14 13 12 16 16 N 1.27572 * 109.22391 * 359.80660 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 19 19 H 1.08007 * 127.92057 * 359.97158 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.2318 -4.6371 0.9098 14 16 3.5337 -5.6549 0.4290 15 7 3.9557 -4.8000 -0.8123 16 7 3.1838 -3.7888 -0.9078 17 1 -0.4850 0.8401 -0.0004 18 1 0.9214 -2.5384 1.9924 19 1 1.5674 -4.7623 1.7522 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306497191.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = 17.885247 kcal Electronic energy + Delta-G solvation = -9261.205975 eV Core-core repulsion = 7292.685959 eV Total energy + Delta-G solvation = -1968.520016 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.23063 -35.86878 -32.28399 -31.24794 -27.50659 -25.84287 -23.15736 -20.34265 -17.90934 -17.17742 -15.55728 -14.95986 -14.67068 -14.20362 -13.17555 -13.06702 -12.00386 -11.55058 -11.32016 -10.97408 -10.88481 -10.20709 -9.67661 -9.49333 -9.32026 -9.17722 -8.61055 -8.40958 -6.10990 -4.28396 0.80637 1.69180 2.25557 2.99944 3.25409 3.33782 3.39946 4.35622 4.76806 5.20022 5.63267 5.64246 6.14097 6.41737 7.38782 7.76305 7.95770 8.44210 8.74218 9.11853 9.45653 10.93467 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.070012 B = 0.012409 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.837462 B = 2255.910879 C = 2513.218040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.557 4.557 8 H 0.062 0.938 9 C 0.302 3.698 10 H 0.085 0.915 11 O -0.554 6.554 12 C 0.035 3.965 13 C -0.292 4.292 14 S 0.345 5.655 15 N -0.296 5.296 16 N -0.218 5.218 17 H 0.263 0.737 18 H 0.350 0.650 19 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -8.013 3.598 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.127 4.127 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.080 0.920 9 C 0.240 3.760 10 H 0.103 0.897 11 O -0.355 6.355 12 C -0.109 4.109 13 C -0.448 4.448 14 S 0.479 5.521 15 N -0.275 5.275 16 N -0.087 5.087 17 H 0.073 0.927 18 H 0.194 0.806 19 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.553 -8.759 2.241 10.123 hybrid contribution -0.299 1.801 0.949 2.057 sum 4.254 -6.959 3.190 8.758 Atomic orbital electron populations 1.70071 1.05935 1.26795 1.46768 1.25035 0.94804 0.99340 0.93564 0.86465 0.80260 0.83096 0.77747 1.19586 1.20642 1.20806 1.21462 0.93419 0.89894 1.54771 0.91989 1.18040 0.85286 0.85554 0.87081 0.89732 1.86634 1.37609 1.95926 1.15331 1.24324 0.97015 0.99570 0.90007 1.27967 1.07535 1.00725 1.08619 1.81033 1.19529 1.30551 1.20956 1.79034 1.24432 1.06732 1.17311 1.71134 1.02810 1.10795 1.24008 0.92736 0.80573 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.71 12.84 55.43 0.71 -24.00 13 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 13 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 13 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 13 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 13 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 13 7 C -0.56 -15.29 8.67 -34.44 -0.30 -15.59 13 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 13 9 C 0.30 7.59 3.38 -29.03 -0.10 7.49 13 10 H 0.09 2.32 8.14 -51.93 -0.42 1.90 13 11 O -0.55 -13.27 12.03 -35.23 -0.42 -13.69 13 12 C 0.03 0.75 6.11 -83.66 -0.51 0.24 13 13 C -0.29 -5.03 10.53 29.70 0.31 -4.72 13 14 S 0.34 5.21 23.40 -107.50 -2.52 2.69 13 15 N -0.30 -5.86 12.54 60.35 0.76 -5.10 13 16 N -0.22 -4.94 11.58 32.45 0.38 -4.57 13 17 H 0.26 7.11 8.31 -40.82 -0.34 6.78 13 18 H 0.35 7.22 8.66 45.56 0.39 7.61 13 19 H 0.19 2.76 7.71 -52.48 -0.40 2.35 13 LS Contribution 197.90 15.07 2.98 2.98 Total: -1.00 -30.54 197.90 -3.80 -34.34 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.03 Total: 1.66 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.69 Total: -10.49 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 1.84 Total: -33.67 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.42 Total: -13.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.52 Total: 2.69 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -30.54 -3.80 -34.34 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306497191.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.227 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds