Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.35339 * 123.76804 * 124.73107 * 12 9 7 14 14 S 1.72113 * 104.15455 * 179.89986 * 13 12 9 15 15 N 1.56510 * 95.88344 * 0.31988 * 14 13 12 16 16 N 1.27572 * 109.22391 * 359.80660 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 19 19 H 1.08007 * 127.92057 * 359.97158 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.2318 -4.6371 0.9098 14 16 3.5337 -5.6549 0.4290 15 7 3.9557 -4.8000 -0.8123 16 7 3.1838 -3.7888 -0.9078 17 1 -0.4850 0.8401 -0.0004 18 1 0.9214 -2.5384 1.9924 19 1 1.5674 -4.7623 1.7522 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306497191.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -6.666207 kcal Electronic energy + Delta-G solvation = -9262.270606 eV Core-core repulsion = 7292.685959 eV Total energy + Delta-G solvation = -1969.584647 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.76713 -37.74173 -34.36113 -32.83458 -29.34611 -27.47896 -25.09645 -21.88567 -19.45420 -19.18433 -17.17755 -16.70506 -16.52525 -15.82314 -15.00239 -14.87362 -13.67762 -13.21189 -13.18129 -12.84079 -12.60613 -12.07590 -11.56251 -11.00046 -10.93026 -10.69533 -10.59273 -10.23407 -8.19254 -6.43560 -0.60693 0.33125 0.86954 1.36583 1.39118 1.44036 1.54545 2.39021 3.01325 3.28733 4.10570 4.19285 4.37769 4.77192 5.39728 5.63112 5.93767 6.62568 6.97145 7.25617 7.41894 8.85474 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.070012 B = 0.012409 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.837462 B = 2255.910879 C = 2513.218040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.569 4.569 8 H 0.049 0.951 9 C 0.308 3.692 10 H 0.046 0.954 11 O -0.560 6.560 12 C 0.002 3.998 13 C -0.286 4.286 14 S 0.485 5.515 15 N -0.340 5.340 16 N -0.267 5.267 17 H 0.266 0.734 18 H 0.365 0.635 19 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -9.029 4.877 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.608 4.608 8 H 0.067 0.933 9 C 0.246 3.754 10 H 0.063 0.937 11 O -0.363 6.363 12 C -0.143 4.143 13 C -0.442 4.442 14 S 0.619 5.381 15 N -0.319 5.319 16 N -0.135 5.135 17 H 0.075 0.925 18 H 0.211 0.789 19 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.456 -9.776 3.517 11.735 hybrid contribution -0.531 1.889 0.646 2.066 sum 4.925 -7.887 4.163 10.188 Atomic orbital electron populations 1.70169 1.07279 1.27763 1.47866 1.25814 0.95594 1.02620 0.93152 0.85467 0.78661 0.79067 0.78124 1.19762 1.20235 1.19619 1.21679 0.92944 0.91550 1.54583 0.93265 1.17474 0.85224 0.86571 0.86137 0.93669 1.86558 1.37901 1.96025 1.15813 1.23754 0.97701 1.00483 0.92354 1.28380 1.08277 0.99710 1.07847 1.80484 1.15290 1.25995 1.16343 1.78565 1.25290 1.07377 1.20705 1.71155 1.03955 1.12711 1.25659 0.92490 0.78903 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.09 12.84 21.45 0.28 -51.82 13 2 C 0.03 1.75 5.40 84.66 0.46 2.21 13 3 Si 0.96 43.80 29.54 68.60 2.03 45.82 13 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 13 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 13 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 13 7 C -0.57 -31.85 8.67 25.60 0.22 -31.63 13 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 13 9 C 0.31 15.83 3.38 29.10 0.10 15.92 13 10 H 0.05 2.63 8.14 -2.39 -0.02 2.61 13 11 O -0.56 -26.84 12.03 -148.98 -1.79 -28.63 13 12 C 0.00 0.09 6.11 41.90 0.26 0.35 13 13 C -0.29 -9.08 10.53 67.15 0.71 -8.38 13 14 S 0.48 12.86 23.40 -56.49 -1.32 11.53 13 15 N -0.34 -12.96 12.54 37.02 0.46 -12.49 13 16 N -0.27 -12.15 11.58 -51.26 -0.59 -12.75 13 17 H 0.27 14.53 8.31 -92.70 -0.77 13.76 13 18 H 0.36 14.73 8.66 -74.06 -0.64 14.08 13 19 H 0.22 5.50 7.71 -2.91 -0.02 5.48 13 Total: -1.00 -66.92 197.90 1.44 -65.48 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.64 Total: 4.38 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 1.74 Total: -21.53 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: 0.15 Total: -77.06 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.79 Total: -28.63 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 12.86 SS G_CDS: -1.32 Total: 11.53 kcal Total: -66.92 1.44 -65.48 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306497191.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.814 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds