Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47903 * 2 1 4 4 C 1.53093 * 109.48240 * 239.97519 * 2 1 3 5 5 C 1.53178 * 109.16255 * 182.39519 * 4 2 1 6 6 C 1.53178 * 109.03511 * 56.98447 * 5 4 2 7 7 H 1.08999 * 109.52488 * 62.92180 * 6 5 4 8 8 O 1.42901 * 109.52407 * 183.04711 * 6 5 4 9 9 C 1.53096 * 109.16278 * 303.01594 * 6 5 4 10 10 H 1.09003 * 109.48254 * 177.58780 * 9 6 5 11 11 C 1.50697 * 109.48418 * 297.61704 * 9 6 5 12 12 H 1.08004 * 119.99202 * 359.97438 * 11 9 6 13 13 C 1.37871 * 120.00289 * 179.97438 * 11 9 6 14 14 N 1.31509 * 120.00175 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00107 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46887 * 90.00207 * 15 13 11 17 17 H 1.48495 * 109.47604 * 210.00430 * 15 13 11 18 18 H 1.48504 * 109.47145 * 330.00552 * 15 13 11 19 19 O 1.42904 * 109.47799 * 120.02263 * 2 1 3 20 20 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47239 * 300.00199 * 1 2 3 22 22 H 1.08997 * 109.46830 * 60.00367 * 1 2 3 23 23 H 1.09000 * 109.52228 * 302.30500 * 4 2 1 24 24 H 1.08998 * 109.52401 * 62.49349 * 4 2 1 25 25 H 1.09002 * 109.54461 * 176.84793 * 5 4 2 26 26 H 1.08996 * 109.54596 * 297.11552 * 5 4 2 27 27 H 0.96688 * 114.00061 * 300.00276 * 8 6 5 28 28 H 0.96998 * 120.00345 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 6 4.0179 -1.4597 0.0807 7 1 3.6617 -2.4898 0.0862 8 8 5.4446 -1.4473 0.1601 9 6 3.4309 -0.7090 1.2789 10 1 3.7103 -1.2200 2.2004 11 6 3.9680 0.6988 1.3023 12 1 4.6591 1.0257 0.5394 13 6 3.5772 1.5694 2.2974 14 7 2.7361 1.1711 3.2266 15 14 4.2435 3.3143 2.3267 16 1 3.3461 4.2000 1.5423 17 1 4.3106 3.7951 3.7300 18 1 5.6037 3.3348 1.7309 19 8 2.0065 -0.6741 1.1665 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6445 -1.7374 -1.2710 24 1 1.7148 -0.1843 -2.1399 25 1 3.9393 -1.3322 -2.0708 26 1 3.9688 0.2440 -1.2410 27 1 5.8832 -1.9025 -0.5715 28 1 2.4608 1.7837 3.9265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306555092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -108.146965 kcal Electronic energy + Delta-G solvation = -12316.896086 eV Core-core repulsion = 10139.531470 eV Total energy + Delta-G solvation = -2177.364616 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.52165 -35.51142 -32.79636 -31.67901 -30.53738 -27.00100 -24.72919 -22.53189 -20.95922 -19.10211 -16.83159 -15.94363 -14.99769 -14.65542 -14.19987 -13.69488 -13.29307 -12.68519 -12.40502 -11.83116 -11.71093 -11.38949 -11.05998 -10.88506 -10.73775 -10.46152 -10.17437 -9.96999 -9.62102 -9.18469 -8.61222 -8.38517 -7.80618 -5.92408 -4.04300 3.32458 3.39666 3.44348 4.46509 4.87255 5.39301 5.48767 5.53285 5.72247 5.83298 5.98696 6.14001 6.27773 6.31196 6.37137 6.45294 6.67920 6.79244 6.93612 7.01834 7.22959 7.71272 7.94766 8.25344 8.43998 8.89751 9.12717 9.65168 11.12784 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.019165 C = 0.015009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.163209 B = 1460.637659 C = 1865.085009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.094 3.906 3 H 0.064 0.936 4 C -0.140 4.140 5 C -0.143 4.143 6 C 0.081 3.919 7 H 0.032 0.968 8 O -0.550 6.550 9 C 0.219 3.781 10 H 0.066 0.934 11 C -0.538 4.538 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.864 5.864 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 O -0.365 6.365 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.354 0.646 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -2.703 -7.575 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.036 3.964 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.180 4.180 6 C 0.022 3.978 7 H 0.050 0.950 8 O -0.352 6.352 9 C 0.163 3.837 10 H 0.084 0.916 11 C -0.576 4.576 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.501 5.501 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.284 6.284 20 H 0.068 0.932 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.198 0.802 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.497 -2.403 -6.707 7.279 hybrid contribution 0.634 0.765 -0.738 1.238 sum -0.862 -1.638 -7.445 7.671 Atomic orbital electron populations 1.21706 0.95623 1.01184 1.01102 1.21598 0.92462 0.97034 0.85343 0.91801 1.22162 0.95652 1.00617 0.99377 1.22209 0.96294 1.02466 0.97070 1.22645 0.80339 0.96847 0.97983 0.95038 1.86692 1.19126 1.79789 1.49591 1.19564 0.78050 0.94961 0.91088 0.91618 1.21408 1.27652 0.96597 1.11954 0.92182 1.25037 0.94462 0.98399 0.95134 1.70061 1.31489 1.35150 1.13387 0.86717 0.79571 0.85188 0.77249 1.20706 1.21176 1.19804 1.87986 1.23222 1.76144 1.41074 0.93219 0.92200 0.92890 0.92712 0.92506 0.93963 0.90382 0.80220 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.56 37.16 0.36 -2.22 15 2 C 0.09 2.07 2.99 -26.68 -0.08 1.99 15 3 H 0.06 1.57 7.09 -51.93 -0.37 1.20 15 4 C -0.14 -2.60 5.42 -26.59 -0.14 -2.75 15 5 C -0.14 -2.75 5.40 -26.55 -0.14 -2.90 15 6 C 0.08 1.77 3.32 -26.59 -0.09 1.68 15 7 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 8 O -0.55 -11.59 12.81 -35.23 -0.45 -12.05 15 9 C 0.22 5.82 2.93 -27.84 -0.08 5.73 15 10 H 0.07 1.92 8.14 -51.93 -0.42 1.50 15 11 C -0.54 -15.13 6.23 -34.44 -0.21 -15.35 15 12 H 0.06 1.70 6.76 -52.48 -0.35 1.35 15 13 C 0.07 2.12 5.40 -17.82 -0.10 2.03 15 14 N -0.86 -25.71 12.84 55.43 0.71 -25.00 15 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 15 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 19 O -0.37 -9.52 9.64 -35.23 -0.34 -9.86 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.08 1.64 6.85 -51.93 -0.36 1.29 15 27 H 0.35 5.39 9.08 45.56 0.41 5.80 15 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 230.62 15.07 3.48 3.48 Total: -1.00 -31.18 230.62 -5.30 -36.48 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.18 Total: 2.02 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.49 Total: -11.77 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.71 Total: -25.00 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.79 Total: -21.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.18 -5.30 -36.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306555092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.664 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds