Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47903 * 2 1 4 4 C 1.53093 * 109.48240 * 239.97519 * 2 1 3 5 5 C 1.53178 * 109.16255 * 182.39519 * 4 2 1 6 6 C 1.53178 * 109.03511 * 56.98447 * 5 4 2 7 7 H 1.08999 * 109.52488 * 62.92180 * 6 5 4 8 8 O 1.42901 * 109.52407 * 183.04711 * 6 5 4 9 9 C 1.53096 * 109.16278 * 303.01594 * 6 5 4 10 10 H 1.09003 * 109.48254 * 177.58780 * 9 6 5 11 11 C 1.50697 * 109.48418 * 297.61704 * 9 6 5 12 12 H 1.08004 * 119.99202 * 359.97438 * 11 9 6 13 13 C 1.37871 * 120.00289 * 179.97438 * 11 9 6 14 14 N 1.31509 * 120.00175 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00107 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46887 * 90.00207 * 15 13 11 17 17 H 1.48495 * 109.47604 * 210.00430 * 15 13 11 18 18 H 1.48504 * 109.47145 * 330.00552 * 15 13 11 19 19 O 1.42904 * 109.47799 * 120.02263 * 2 1 3 20 20 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47239 * 300.00199 * 1 2 3 22 22 H 1.08997 * 109.46830 * 60.00367 * 1 2 3 23 23 H 1.09000 * 109.52228 * 302.30500 * 4 2 1 24 24 H 1.08998 * 109.52401 * 62.49349 * 4 2 1 25 25 H 1.09002 * 109.54461 * 176.84793 * 5 4 2 26 26 H 1.08996 * 109.54596 * 297.11552 * 5 4 2 27 27 H 0.96688 * 114.00061 * 300.00276 * 8 6 5 28 28 H 0.96998 * 120.00345 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7705 -1.2123 6 6 4.0179 -1.4597 0.0807 7 1 3.6617 -2.4898 0.0862 8 8 5.4446 -1.4473 0.1601 9 6 3.4309 -0.7090 1.2789 10 1 3.7103 -1.2200 2.2004 11 6 3.9680 0.6988 1.3023 12 1 4.6591 1.0257 0.5394 13 6 3.5772 1.5694 2.2974 14 7 2.7361 1.1711 3.2266 15 14 4.2435 3.3143 2.3267 16 1 3.3461 4.2000 1.5423 17 1 4.3106 3.7951 3.7300 18 1 5.6037 3.3348 1.7309 19 8 2.0065 -0.6741 1.1665 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6445 -1.7374 -1.2710 24 1 1.7148 -0.1843 -2.1399 25 1 3.9393 -1.3322 -2.0708 26 1 3.9688 0.2440 -1.2410 27 1 5.8832 -1.9025 -0.5715 28 1 2.4608 1.7837 3.9265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306555092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -132.016597 kcal Electronic energy + Delta-G solvation = -12317.931151 eV Core-core repulsion = 10139.531470 eV Total energy + Delta-G solvation = -2178.399681 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.29685 -37.21744 -34.79283 -33.51597 -32.24277 -28.89221 -26.59893 -24.28253 -22.67060 -20.91241 -18.68444 -17.77089 -16.87069 -16.58343 -16.07800 -15.39651 -15.11292 -14.30637 -14.05774 -13.68115 -13.35872 -13.01368 -12.79883 -12.73937 -12.56621 -12.19755 -12.05066 -11.68274 -11.40604 -10.93035 -10.66235 -10.34088 -9.69376 -8.08975 -6.27534 1.36969 1.38696 1.49460 2.40495 3.03595 3.44309 3.83733 4.00606 4.13236 4.25090 4.37139 4.55983 4.69013 4.83246 4.89683 5.00876 5.04221 5.17076 5.35300 5.41924 5.55507 5.66272 5.77113 6.14825 6.75292 7.05053 7.17744 7.47648 8.96405 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.019165 C = 0.015009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.163209 B = 1460.637659 C = 1865.085009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.030 0.970 4 C -0.133 4.133 5 C -0.137 4.137 6 C 0.086 3.914 7 H 0.046 0.954 8 O -0.571 6.571 9 C 0.212 3.788 10 H 0.019 0.981 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.269 1.269 19 O -0.391 6.391 20 H 0.063 0.937 21 H 0.037 0.963 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.382 0.618 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -2.661 -9.720 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 H 0.048 0.952 4 C -0.170 4.170 5 C -0.174 4.174 6 C 0.027 3.973 7 H 0.064 0.936 8 O -0.378 6.378 9 C 0.156 3.844 10 H 0.037 0.963 11 C -0.581 4.581 12 H 0.072 0.928 13 C -0.179 4.179 14 N -0.540 5.540 15 Si 0.775 3.225 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.194 1.194 19 O -0.311 6.311 20 H 0.082 0.918 21 H 0.056 0.944 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.230 0.770 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.563 -2.370 -8.881 9.324 hybrid contribution 0.667 0.702 -0.082 0.972 sum -0.896 -1.668 -8.963 9.161 Atomic orbital electron populations 1.21688 0.93050 1.02333 1.01841 1.21876 0.94559 0.95378 0.85771 0.95241 1.22102 0.95025 1.01472 0.98437 1.22150 0.96857 1.01435 0.96984 1.22377 0.80679 0.97071 0.97151 0.93618 1.86610 1.18936 1.80585 1.51648 1.19378 0.78929 0.94463 0.91657 0.96318 1.21606 1.27211 0.97647 1.11595 0.92767 1.25827 0.94776 1.02474 0.94832 1.70195 1.33039 1.36546 1.14181 0.85702 0.79035 0.80405 0.77387 1.19704 1.20799 1.19374 1.87894 1.22708 1.76727 1.43743 0.91806 0.94350 0.89287 0.91002 0.89270 0.89686 0.92599 0.77016 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.56 71.98 0.69 -3.97 15 2 C 0.08 3.55 2.99 30.63 0.09 3.64 15 3 H 0.03 1.46 7.09 -2.39 -0.02 1.44 15 4 C -0.13 -4.49 5.42 30.68 0.17 -4.32 15 5 C -0.14 -4.88 5.40 30.71 0.17 -4.72 15 6 C 0.09 3.67 3.32 30.69 0.10 3.77 15 7 H 0.05 1.80 8.14 -2.39 -0.02 1.79 15 8 O -0.57 -23.41 12.81 -148.98 -1.91 -25.31 15 9 C 0.21 11.51 2.93 29.88 0.09 11.59 15 10 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 11 C -0.54 -31.10 6.23 25.60 0.16 -30.94 15 12 H 0.05 3.10 6.76 -2.91 -0.02 3.08 15 13 C 0.02 1.29 5.40 84.65 0.46 1.74 15 14 N -0.90 -55.30 12.84 21.44 0.28 -55.02 15 15 Si 0.95 45.20 29.54 68.60 2.03 47.23 15 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 19 O -0.39 -20.72 9.64 -148.98 -1.44 -22.16 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.06 2.25 6.85 -2.39 -0.02 2.23 15 27 H 0.38 10.64 9.08 -74.07 -0.67 9.97 15 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -68.95 230.62 1.35 -67.61 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.47 Total: 10.86 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 1.92 Total: -23.21 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.28 Total: -55.02 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -3.34 Total: -47.47 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.95 1.35 -67.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306555092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.411 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds