Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.50502 * 297.74469 * 11 10 9 13 13 C 1.54087 * 110.56930 * 174.99802 * 11 10 9 14 14 O 1.45695 * 104.01305 * 241.42815 * 13 11 10 15 15 C 1.33775 * 109.47502 * 359.97438 * 14 13 11 16 16 O 1.21508 * 123.07269 * 180.02562 * 15 14 13 17 17 N 1.34009 * 113.85680 * 0.02562 * 15 14 13 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.08999 * 110.51786 * 0.05882 * 13 11 10 23 23 H 1.08997 * 110.52280 * 122.65506 * 13 11 10 24 24 H 0.96993 * 125.55636 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4543 -4.8013 0.9011 13 6 1.8047 -6.1650 -0.1280 14 8 1.3013 -6.7298 -1.3732 15 6 0.4132 -5.8900 -1.9169 16 8 -0.1614 -6.1187 -2.9628 17 7 0.2152 -4.7735 -1.2027 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 2.8811 -6.0042 -0.1890 23 1 1.5634 -6.8142 0.7136 24 1 -0.3896 -4.0529 -1.4386 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306572400.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -62.438763 kcal Electronic energy + Delta-G solvation = -11297.800934 eV Core-core repulsion = 9018.878031 eV Total energy + Delta-G solvation = -2278.922903 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.31438 -37.00487 -35.70941 -33.68455 -31.29693 -29.39267 -25.75243 -23.13376 -21.94411 -21.45692 -17.94476 -17.28277 -16.93536 -16.08742 -14.92152 -14.63026 -14.01153 -13.86720 -13.44742 -13.30848 -12.55944 -11.93185 -11.81689 -10.97208 -10.91530 -10.55196 -10.41084 -10.16662 -9.87067 -9.05310 -9.02583 -7.12103 -5.90972 -3.21900 2.94137 3.02303 3.36122 3.41975 3.44222 3.79217 4.21150 4.53805 4.80301 5.05120 5.32491 5.45606 5.57752 5.62787 5.95916 6.32715 6.44715 7.10390 7.50812 7.57848 8.25987 8.37230 9.38234 9.89594 10.23923 11.31532 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.074952 B = 0.009138 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.482398 B = 3063.357116 C = 3247.220774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.085 3.915 12 H 0.103 0.897 13 C 0.047 3.953 14 O -0.335 6.335 15 C 0.644 3.356 16 O -0.537 6.537 17 N -0.717 5.717 18 H 0.257 0.743 19 H 0.383 0.617 20 H 0.029 0.971 21 H 0.038 0.962 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -9.282 2.878 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.021 4.021 12 H 0.121 0.879 13 C -0.028 4.028 14 O -0.245 6.245 15 C 0.396 3.604 16 O -0.423 6.423 17 N -0.389 5.389 18 H 0.067 0.933 19 H 0.217 0.783 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.204 -9.637 2.300 10.413 hybrid contribution -0.082 1.468 0.107 1.475 sum 3.122 -8.169 2.408 9.070 Atomic orbital electron populations 1.69647 1.05172 1.25921 1.57175 1.24767 0.95572 0.97893 1.02396 0.86076 0.78781 0.83771 0.77266 1.20474 1.21735 1.21729 1.19232 0.91144 0.83827 1.43549 0.90897 1.42231 1.05726 0.99766 1.89784 1.21089 0.92834 0.85216 0.99279 1.22716 0.93620 0.95941 0.89834 0.87918 1.24337 1.00579 0.93044 0.84865 1.87209 1.55435 1.44094 1.37776 1.18519 0.78819 0.79630 0.83395 1.91040 1.51687 1.77929 1.21660 1.46054 1.46394 1.22004 1.24447 0.93327 0.78312 0.95329 0.94395 0.87473 0.87708 0.71561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.28 14 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 14 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 14 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 14 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 14 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 14 7 C -0.25 -6.55 9.99 -15.06 -0.15 -6.70 14 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 14 9 N -0.73 -16.91 5.50 -59.91 -0.33 -17.24 14 10 C 0.14 2.51 5.79 -4.04 -0.02 2.49 14 11 C 0.08 1.17 3.84 -67.04 -0.26 0.91 14 12 H 0.10 1.27 8.14 -51.93 -0.42 0.85 14 13 C 0.05 0.52 7.88 37.73 0.30 0.82 14 14 O -0.33 -5.14 11.09 -37.84 -0.42 -5.56 14 15 C 0.64 11.46 9.16 53.71 0.49 11.95 14 16 O -0.54 -11.50 18.04 -19.11 -0.34 -11.85 14 17 N -0.72 -11.52 5.86 -58.23 -0.34 -11.86 14 18 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 19 H 0.38 9.23 7.32 -40.82 -0.30 8.93 14 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 14 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 14 22 H 0.11 0.99 7.73 -51.93 -0.40 0.59 14 23 H 0.10 0.81 8.14 -51.93 -0.42 0.39 14 24 H 0.44 7.34 8.70 -40.82 -0.36 6.98 14 LS Contribution 219.04 15.07 3.30 3.30 Total: -1.00 -32.05 219.04 -4.46 -36.51 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.29 Total: 7.19 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 0.26 Total: 9.11 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.05 Total: -55.38 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.76 Total: -17.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -32.05 -4.46 -36.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572400.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds