Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.50502 * 297.74469 * 11 10 9 13 13 C 1.54087 * 110.56930 * 174.99802 * 11 10 9 14 14 O 1.45695 * 104.01305 * 241.42815 * 13 11 10 15 15 C 1.33775 * 109.47502 * 359.97438 * 14 13 11 16 16 O 1.21508 * 123.07269 * 180.02562 * 15 14 13 17 17 N 1.34009 * 113.85680 * 0.02562 * 15 14 13 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.08999 * 110.51786 * 0.05882 * 13 11 10 23 23 H 1.08997 * 110.52280 * 122.65506 * 13 11 10 24 24 H 0.96993 * 125.55636 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4543 -4.8013 0.9011 13 6 1.8047 -6.1650 -0.1280 14 8 1.3013 -6.7298 -1.3732 15 6 0.4132 -5.8900 -1.9169 16 8 -0.1614 -6.1187 -2.9628 17 7 0.2152 -4.7735 -1.2027 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 2.8811 -6.0042 -0.1890 23 1 1.5634 -6.8142 0.7136 24 1 -0.3896 -4.0529 -1.4386 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572400.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -88.618929 kcal Electronic energy + Delta-G solvation = -11298.936191 eV Core-core repulsion = 9018.878031 eV Total energy + Delta-G solvation = -2280.058160 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.55585 -38.43709 -37.17031 -35.31675 -33.04629 -30.78862 -27.28509 -24.79202 -23.25566 -22.81005 -19.40493 -18.96936 -18.16062 -17.44243 -16.69038 -16.04222 -15.51813 -15.28136 -15.09585 -14.49896 -14.03210 -13.40324 -13.27894 -12.81960 -12.63376 -12.08126 -11.89788 -11.83978 -11.63920 -11.00213 -10.32169 -9.03912 -7.97872 -5.26626 1.48056 1.49467 1.58376 1.61262 1.75102 2.53322 2.68010 3.21259 3.38281 3.78330 3.95497 4.23960 4.36838 4.57202 4.65027 4.97520 5.07229 5.49924 5.75919 6.23225 6.28103 7.00655 7.32167 8.04191 8.25895 9.25251 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.074952 B = 0.009138 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.482398 B = 3063.357116 C = 3247.220774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.744 5.744 10 C 0.141 3.859 11 C 0.089 3.911 12 H 0.124 0.876 13 C 0.051 3.949 14 O -0.340 6.340 15 C 0.645 3.355 16 O -0.583 6.583 17 N -0.716 5.716 18 H 0.251 0.749 19 H 0.376 0.624 20 H 0.022 0.978 21 H 0.062 0.938 22 H 0.130 0.870 23 H 0.149 0.851 24 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -10.092 3.980 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.226 1.226 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.014 3.986 11 C -0.016 4.016 12 H 0.142 0.858 13 C -0.023 4.023 14 O -0.250 6.250 15 C 0.398 3.602 16 O -0.473 6.473 17 N -0.386 5.386 18 H 0.060 0.940 19 H 0.208 0.792 20 H 0.040 0.960 21 H 0.079 0.921 22 H 0.148 0.852 23 H 0.167 0.833 24 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.629 -10.485 3.439 11.966 hybrid contribution -0.424 1.654 -0.185 1.717 sum 4.206 -8.831 3.254 10.308 Atomic orbital electron populations 1.69782 1.06497 1.26069 1.59362 1.25511 0.96350 1.01008 1.03606 0.85122 0.78367 0.80063 0.76470 1.18968 1.22597 1.22013 1.19635 0.91641 0.85141 1.41199 0.90317 1.42424 1.05677 1.00977 1.89631 1.21296 0.93476 0.84142 0.99665 1.22833 0.93046 0.96083 0.89609 0.85848 1.24766 1.01360 0.91796 0.84393 1.87195 1.54638 1.43722 1.39455 1.18586 0.78753 0.79966 0.82940 1.90995 1.53578 1.78980 1.23743 1.46128 1.46192 1.21311 1.24990 0.94005 0.79216 0.96044 0.92060 0.85243 0.83320 0.72200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.50 13.06 21.65 0.28 -56.21 14 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 14 3 Si 0.97 44.43 29.55 68.60 2.03 46.46 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 14 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 14 6 H -0.29 -13.41 7.11 99.48 0.71 -12.71 14 7 C -0.24 -12.69 9.99 84.03 0.84 -11.86 14 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 14 9 N -0.74 -33.52 5.50 -343.45 -1.89 -35.41 14 10 C 0.14 4.55 5.79 86.38 0.50 5.05 14 11 C 0.09 2.20 3.84 45.25 0.17 2.37 14 12 H 0.12 2.60 8.14 -2.39 -0.02 2.58 14 13 C 0.05 0.90 7.88 72.35 0.57 1.47 14 14 O -0.34 -9.60 11.09 -47.35 -0.53 -10.13 14 15 C 0.64 22.32 9.16 129.91 1.19 23.51 14 16 O -0.58 -25.17 18.04 19.66 0.35 -24.82 14 17 N -0.72 -22.18 5.86 -569.84 -3.34 -25.52 14 18 H 0.25 14.34 8.31 -92.71 -0.77 13.57 14 19 H 0.38 17.92 7.32 -92.71 -0.68 17.24 14 20 H 0.02 0.74 8.14 -2.39 -0.02 0.72 14 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 14 22 H 0.13 1.78 7.73 -2.39 -0.02 1.76 14 23 H 0.15 1.45 8.14 -2.39 -0.02 1.43 14 24 H 0.44 14.46 8.70 -92.71 -0.81 13.66 14 Total: -1.00 -68.95 219.04 0.40 -68.55 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.25 Total: 20.00 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 3.74 Total: 17.07 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -4.94 Total: -117.14 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.17 Total: -34.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.95 0.40 -68.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572400.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.065 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds