Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08997 * 110.50361 * 66.29117 * 11 10 9 13 13 C 1.54092 * 110.56472 * 189.18810 * 11 10 9 14 14 O 1.45707 * 104.00415 * 118.57400 * 13 11 10 15 15 C 1.33763 * 109.47750 * 359.97438 * 14 13 11 16 16 O 1.21517 * 123.07202 * 180.02562 * 15 14 13 17 17 N 1.34006 * 113.86317 * 0.02562 * 15 14 13 18 18 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 19 19 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 20 20 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 21 21 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 22 22 H 1.08997 * 110.52187 * 237.19984 * 13 11 10 23 23 H 1.08999 * 110.51942 * 359.94144 * 13 11 10 24 24 H 0.96994 * 125.57056 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.5039 -4.8388 -0.9458 13 6 1.7944 -6.1577 0.2136 14 8 1.2209 -6.6694 1.4515 15 6 0.3056 -5.8076 1.9086 16 8 -0.3265 -5.9915 2.9300 17 7 0.1493 -4.7229 1.1374 18 1 -0.4849 0.8401 0.0004 19 1 0.3555 -2.3881 -0.0002 20 1 2.6849 -3.7105 -0.8952 21 1 2.6843 -3.7187 0.8848 22 1 1.5978 -6.8433 -0.6106 23 1 2.8658 -5.9934 0.3281 24 1 -0.4663 -3.9931 1.3082 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572401.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -88.158845 kcal Electronic energy + Delta-G solvation = -11313.092984 eV Core-core repulsion = 9033.054775 eV Total energy + Delta-G solvation = -2280.038210 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.55618 -38.43405 -37.17999 -35.30355 -33.03735 -30.79972 -27.28455 -24.80639 -23.25515 -22.79214 -19.40887 -18.96362 -18.16491 -17.44562 -16.69496 -16.02559 -15.52954 -15.28348 -15.09273 -14.48602 -14.05852 -13.41173 -13.25178 -12.82167 -12.62763 -12.08169 -11.89841 -11.84105 -11.63857 -11.00127 -10.31776 -9.03988 -7.98105 -5.26777 1.47970 1.49345 1.58308 1.61163 1.75359 2.53159 2.68580 3.21555 3.38169 3.78470 3.95664 4.24161 4.36411 4.57735 4.65280 4.97442 5.07351 5.49836 5.75868 6.22981 6.28520 7.00687 7.31972 8.04141 8.25561 9.25111 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073728 B = 0.009266 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.683110 B = 3021.057990 C = 3217.145159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.744 5.744 10 C 0.141 3.859 11 C 0.089 3.911 12 H 0.125 0.875 13 C 0.051 3.949 14 O -0.341 6.341 15 C 0.644 3.356 16 O -0.584 6.584 17 N -0.716 5.716 18 H 0.251 0.749 19 H 0.375 0.625 20 H 0.062 0.938 21 H 0.022 0.978 22 H 0.150 0.850 23 H 0.129 0.871 24 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -10.250 -3.949 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.014 3.986 11 C -0.016 4.016 12 H 0.143 0.857 13 C -0.023 4.023 14 O -0.250 6.250 15 C 0.397 3.603 16 O -0.473 6.473 17 N -0.386 5.386 18 H 0.060 0.940 19 H 0.208 0.792 20 H 0.079 0.921 21 H 0.040 0.960 22 H 0.167 0.833 23 H 0.147 0.853 24 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.818 -10.620 -3.392 12.145 hybrid contribution -0.430 1.659 0.143 1.720 sum 4.388 -8.961 -3.248 10.493 Atomic orbital electron populations 1.69787 1.06511 1.26068 1.59368 1.25520 0.96358 1.01030 1.03605 0.85115 0.78371 0.80032 0.76463 1.18940 1.22013 1.22609 1.19641 0.91652 0.85131 1.41196 0.90280 1.42418 1.05678 1.01002 1.89638 1.21309 0.93486 0.84151 0.99699 1.22855 0.91722 0.95980 0.91040 0.85721 1.24785 1.00263 0.92883 0.84366 1.87195 1.51553 1.44354 1.41929 1.18587 0.79180 0.79786 0.82705 1.90997 1.51148 1.79235 1.25968 1.46131 1.43463 1.22859 1.26171 0.94006 0.79243 0.92069 0.95980 0.83275 0.85261 0.72218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.63 13.06 21.65 0.28 -56.35 14 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 14 3 Si 0.97 44.50 29.55 68.60 2.03 46.53 14 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 14 6 H -0.30 -13.96 7.11 99.48 0.71 -13.25 14 7 C -0.24 -12.72 9.99 84.03 0.84 -11.88 14 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 14 9 N -0.74 -33.62 5.47 -343.44 -1.88 -35.50 14 10 C 0.14 4.53 5.82 86.38 0.50 5.03 14 11 C 0.09 2.19 3.90 45.25 0.18 2.36 14 12 H 0.13 2.58 8.14 -2.39 -0.02 2.56 14 13 C 0.05 0.91 7.88 72.35 0.57 1.48 14 14 O -0.34 -9.68 11.09 -47.24 -0.52 -10.20 14 15 C 0.64 22.53 9.16 129.91 1.19 23.72 14 16 O -0.58 -25.43 18.04 19.63 0.35 -25.08 14 17 N -0.72 -22.41 5.78 -569.83 -3.29 -25.70 14 18 H 0.25 14.37 8.31 -92.71 -0.77 13.60 14 19 H 0.38 17.95 7.02 -92.71 -0.65 17.29 14 20 H 0.06 1.75 8.14 -2.38 -0.02 1.74 14 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 14 22 H 0.15 1.43 8.14 -2.39 -0.02 1.41 14 23 H 0.13 1.78 7.73 -2.39 -0.02 1.76 14 24 H 0.43 14.69 8.44 -92.71 -0.78 13.90 14 Total: -1.00 -69.30 218.44 0.51 -68.78 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.20 Total: 20.31 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 3.74 Total: 17.21 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -4.89 Total: -117.55 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.17 Total: -35.28 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.30 0.51 -68.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572401.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.375 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds