Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86793 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47025 * 270.00348 * 3 2 1 5 5 H 1.48501 * 109.47427 * 30.00203 * 3 2 1 6 6 H 1.48494 * 109.47273 * 150.00516 * 3 2 1 7 7 C 1.38803 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.76199 * 99.99996 * 180.02562 * 9 7 2 11 11 N 1.30355 * 120.00111 * 359.97438 * 10 9 7 12 12 N 1.37612 * 120.00196 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00311 * 180.02562 * 12 10 9 14 14 C 1.53001 * 117.49981 * 223.74370 * 13 12 10 15 15 C 1.52997 * 117.49931 * 155.08263 * 13 12 10 16 16 H 0.96989 * 120.00494 * 359.97438 * 1 2 3 17 17 H 0.97001 * 119.99856 * 179.97438 * 11 10 9 18 18 H 0.97005 * 119.99883 * 359.97438 * 12 10 9 19 19 H 1.09001 * 115.54818 * 9.41205 * 13 12 10 20 20 H 1.09004 * 117.49476 * 359.97438 * 14 13 12 21 21 H 1.08995 * 117.50163 * 145.01621 * 14 13 12 22 22 H 1.08999 * 117.49561 * 214.97429 * 15 13 12 23 23 H 1.08999 * 117.50057 * 359.97388 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4402 0.6999 7 6 2.0094 -1.2021 -0.0005 8 1 3.0894 -1.2020 -0.0010 9 16 1.1285 -2.7280 -0.0005 10 6 2.4783 -3.8605 -0.0005 11 7 3.7033 -3.4147 -0.0010 12 7 2.2395 -5.2158 -0.0011 13 6 3.3617 -6.1574 -0.0005 14 6 3.2734 -7.3623 -0.9393 15 6 3.1114 -7.5545 0.5707 16 1 -0.4850 0.8399 0.0004 17 1 4.4463 -4.0382 -0.0007 18 1 1.3279 -5.5476 -0.0011 19 1 4.3453 -5.7164 0.1612 20 1 2.3800 -7.4546 -1.5570 21 1 4.1989 -7.7143 -1.3949 22 1 3.9305 -8.0328 1.1077 23 1 2.1118 -7.7729 0.9465 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306709878.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = 22.705190 kcal Electronic energy + Delta-G solvation = -8989.796310 eV Core-core repulsion = 7157.318397 eV Total energy + Delta-G solvation = -1832.477913 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.37788 -36.05409 -34.63457 -31.61932 -27.60258 -24.59642 -23.27075 -21.51644 -19.98960 -18.25712 -17.68399 -16.85382 -15.90140 -15.43200 -14.74243 -14.27935 -13.62646 -13.20397 -12.92071 -12.75920 -12.43152 -11.91148 -11.80317 -11.42362 -11.08830 -10.78317 -10.26086 -9.12083 -8.74897 -8.40500 -6.18440 1.06765 1.41482 1.41582 1.57224 1.67364 2.21321 2.62730 2.96788 3.01476 3.31002 3.81190 3.96918 4.08440 4.68370 4.74401 4.99094 5.02667 5.20600 5.61915 5.83213 6.42222 6.71106 7.08411 7.59696 8.69615 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.097469 B = 0.009208 C = 0.008616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.202504 B = 3040.037666 C = 3249.081433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.094 0.906 9 S 0.043 5.957 10 C 0.384 3.616 11 N -0.802 5.802 12 N -0.718 5.718 13 C 0.048 3.952 14 C -0.183 4.183 15 C -0.169 4.169 16 H 0.276 0.724 17 H 0.319 0.681 18 H 0.403 0.597 19 H 0.115 0.885 20 H 0.097 0.903 21 H 0.114 0.886 22 H 0.119 0.881 23 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -11.434 -0.087 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.688 4.688 8 H 0.112 0.888 9 S 0.273 5.727 10 C -0.003 4.003 11 N -0.446 5.446 12 N -0.360 5.360 13 C -0.061 4.061 14 C -0.223 4.223 15 C -0.207 4.207 16 H 0.085 0.915 17 H 0.137 0.863 18 H 0.238 0.762 19 H 0.132 0.868 20 H 0.116 0.884 21 H 0.133 0.867 22 H 0.137 0.863 23 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.964 -10.561 -0.080 10.969 hybrid contribution 1.393 -0.046 -0.023 1.394 sum 4.357 -10.606 -0.103 11.467 Atomic orbital electron populations 1.70021 1.07291 1.29072 1.48382 1.26005 0.96044 1.02810 0.93498 0.84990 0.78064 0.76349 0.78801 1.19324 1.19446 1.19537 1.23425 0.96919 0.90520 1.57932 0.88825 1.83299 1.02739 0.97645 1.89007 1.25237 0.98593 0.86001 0.90438 1.70476 0.98823 1.39705 1.35563 1.44946 1.08495 1.02015 1.80588 1.21574 0.91748 0.85370 1.07359 1.23509 1.04574 1.00778 0.93404 1.23446 1.04510 0.96517 0.96274 0.91522 0.86288 0.76191 0.86761 0.88414 0.86739 0.86318 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.14 13.22 21.64 0.29 -52.86 14 2 C 0.02 1.21 5.49 84.87 0.47 1.67 14 3 Si 1.00 45.08 29.55 68.60 2.03 47.11 14 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 14 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 14 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 14 7 C -0.54 -31.75 9.26 67.96 0.63 -31.12 14 8 H 0.09 5.70 6.57 -2.91 -0.02 5.68 14 9 S 0.04 2.26 21.81 -56.49 -1.23 1.02 14 10 C 0.38 17.40 8.14 179.47 1.46 18.86 14 11 N -0.80 -38.22 12.15 -56.67 -0.69 -38.91 14 12 N -0.72 -24.68 5.68 -326.34 -1.85 -26.53 14 13 C 0.05 1.32 6.39 44.99 0.29 1.60 14 14 C -0.18 -3.73 10.46 30.62 0.32 -3.41 14 15 C -0.17 -3.25 10.46 30.62 0.32 -2.93 14 16 H 0.28 14.89 8.31 -92.72 -0.77 14.12 14 17 H 0.32 13.19 6.37 -92.71 -0.59 12.60 14 18 H 0.40 12.36 8.88 -92.70 -0.82 11.54 14 19 H 0.11 3.26 6.11 -2.39 -0.01 3.24 14 20 H 0.10 1.98 8.14 -2.38 -0.02 1.96 14 21 H 0.11 1.93 8.14 -2.39 -0.02 1.91 14 22 H 0.12 1.83 8.14 -2.39 -0.02 1.81 14 23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 14 Total: -1.00 -65.88 222.73 1.85 -64.04 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.17 Total: 21.45 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 3.48 Total: -15.32 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -2.26 Total: -118.30 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.23 Total: 1.02 kcal Total: -65.88 1.85 -64.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709878.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.742 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds