Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48501 * 109.47032 * 270.00218 * 3 2 1 5 5 H 1.48494 * 109.47061 * 30.00635 * 3 2 1 6 6 H 1.48502 * 109.47016 * 150.00280 * 3 2 1 7 7 C 1.38809 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99630 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.76196 * 100.00017 * 180.02562 * 9 7 2 11 11 N 1.29279 * 118.86176 * 359.97346 * 10 9 7 12 12 C 1.45836 * 123.75226 * 180.98560 * 11 10 9 13 13 C 1.53032 * 110.60021 * 339.20788 * 12 11 10 14 14 C 1.53617 * 108.44666 * 49.44710 * 13 12 11 15 15 N 1.37603 * 118.86206 * 179.97438 * 10 9 7 16 16 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 17 17 H 1.08997 * 109.25188 * 218.92089 * 12 11 10 18 18 H 1.08999 * 109.25045 * 99.49421 * 12 11 10 19 19 H 1.09002 * 109.63681 * 289.76366 * 13 12 11 20 20 H 1.08997 * 109.64030 * 169.13622 * 13 12 11 21 21 H 1.08997 * 109.87377 * 60.03822 * 14 13 12 22 22 H 1.08995 * 109.86891 * 181.02179 * 14 13 12 23 23 H 0.97007 * 120.65251 * 347.08284 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4402 0.7000 7 6 2.0094 -1.2021 -0.0005 8 1 3.0894 -1.2020 -0.0010 9 16 1.1285 -2.7280 -0.0005 10 6 2.4782 -3.8606 -0.0005 11 7 3.6840 -3.3943 -0.0011 12 6 4.8770 -4.2329 -0.0220 13 6 4.5505 -5.6459 0.4665 14 6 3.3101 -6.1468 -0.2886 15 7 2.2124 -5.2107 0.0000 16 1 -0.4850 0.8400 0.0004 17 1 5.6356 -3.7948 0.6265 18 1 5.2620 -4.2848 -1.0404 19 1 4.3443 -5.6250 1.5367 20 1 5.3935 -6.3069 0.2656 21 1 3.5105 -6.1645 -1.3599 22 1 3.0458 -7.1468 0.0553 23 1 1.3189 -5.5388 0.1869 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306912877.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = 10.974065 kcal Electronic energy + Delta-G solvation = -9300.598025 eV Core-core repulsion = 7467.611412 eV Total energy + Delta-G solvation = -1832.986613 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.16662 -32.50434 -31.98867 -31.32103 -25.60246 -24.45086 -22.93430 -18.65798 -17.96474 -16.70012 -14.93421 -14.73781 -14.67994 -13.59048 -13.11266 -12.87306 -12.68531 -11.79304 -11.28467 -11.01672 -10.86904 -10.62043 -10.28550 -9.90638 -9.04414 -8.62659 -8.10906 -7.59113 -6.62389 -6.25069 -3.97144 2.98285 3.26778 3.33677 3.40787 3.45620 4.14175 4.30935 5.10480 5.17430 5.25911 5.34172 5.49491 5.77271 5.86220 6.00218 6.19256 6.46631 6.56833 7.24986 7.80595 8.23401 8.68572 9.21361 9.28187 10.84254 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.068012 B = 0.012111 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.595117 B = 2311.474454 C = 2682.828554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.928 3.072 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.109 0.891 9 S 0.058 5.942 10 C 0.372 3.628 11 N -0.616 5.616 12 C 0.070 3.930 13 C -0.166 4.166 14 C 0.124 3.876 15 N -0.760 5.760 16 H 0.269 0.731 17 H 0.068 0.932 18 H 0.051 0.949 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -8.897 0.057 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.659 4.659 8 H 0.127 0.873 9 S 0.291 5.709 10 C -0.010 4.010 11 N -0.350 5.350 12 C -0.064 4.064 13 C -0.206 4.206 14 C -0.003 4.003 15 N -0.406 5.406 16 H 0.078 0.922 17 H 0.086 0.914 18 H 0.069 0.931 19 H 0.083 0.917 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.697 -8.223 0.026 9.016 hybrid contribution 1.460 0.050 0.063 1.463 sum 5.158 -8.173 0.089 9.665 Atomic orbital electron populations 1.69951 1.06047 1.27767 1.48207 1.25102 0.95088 0.99443 0.94336 0.86003 0.79528 0.80675 0.78363 1.20299 1.21016 1.19345 1.23257 0.97211 0.88661 1.56749 0.87311 1.83534 1.01628 0.97867 1.87845 1.25203 0.98568 0.85465 0.91797 1.71841 0.96422 1.33586 1.33160 1.21656 0.95277 0.90074 0.99419 1.22395 0.97994 0.99574 1.00670 1.21437 0.87925 0.92409 0.98559 1.45281 1.11467 1.03904 1.79900 0.92156 0.91404 0.93097 0.91677 0.91536 0.93036 0.90967 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.22 55.49 0.73 -25.03 14 2 C 0.07 1.92 5.49 -17.47 -0.10 1.83 14 3 Si 0.93 22.05 29.55 -169.99 -5.02 17.02 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 14 7 C -0.51 -14.77 9.23 30.94 0.29 -14.49 14 8 H 0.11 3.24 6.52 -52.49 -0.34 2.89 14 9 S 0.06 1.50 21.79 -107.50 -2.34 -0.84 14 10 C 0.37 8.50 7.80 -88.98 -0.69 7.81 14 11 N -0.62 -14.66 8.66 -61.65 -0.53 -15.20 14 12 C 0.07 1.31 7.19 -4.38 -0.03 1.28 14 13 C -0.17 -2.52 6.25 -26.39 -0.16 -2.69 14 14 C 0.12 1.82 7.21 -3.38 -0.02 1.79 14 15 N -0.76 -13.67 5.77 -60.49 -0.35 -14.02 14 16 H 0.27 7.33 8.31 -40.82 -0.34 6.99 14 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 14 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.06 1.04 8.14 -51.93 -0.42 0.61 14 20 H 0.07 0.81 8.14 -51.93 -0.42 0.38 14 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 14 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 14 23 H 0.40 6.27 8.89 -40.82 -0.36 5.91 14 LS Contribution 216.06 15.07 3.26 3.26 Total: -1.00 -31.28 216.06 -7.36 -38.64 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.38 Total: 0.63 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.72 Total: -4.46 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.15 Total: -54.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.34 Total: -0.84 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -31.28 -7.36 -38.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306912877.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.615 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds