Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48501 * 109.47032 * 270.00218 * 3 2 1 5 5 H 1.48494 * 109.47061 * 30.00635 * 3 2 1 6 6 H 1.48502 * 109.47016 * 150.00280 * 3 2 1 7 7 C 1.38809 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99630 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.76196 * 100.00017 * 180.02562 * 9 7 2 11 11 N 1.29279 * 118.86176 * 359.97346 * 10 9 7 12 12 C 1.45836 * 123.75226 * 180.98560 * 11 10 9 13 13 C 1.53032 * 110.60021 * 339.20788 * 12 11 10 14 14 C 1.53617 * 108.44666 * 49.44710 * 13 12 11 15 15 N 1.37603 * 118.86206 * 179.97438 * 10 9 7 16 16 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 17 17 H 1.08997 * 109.25188 * 218.92089 * 12 11 10 18 18 H 1.08999 * 109.25045 * 99.49421 * 12 11 10 19 19 H 1.09002 * 109.63681 * 289.76366 * 13 12 11 20 20 H 1.08997 * 109.64030 * 169.13622 * 13 12 11 21 21 H 1.08997 * 109.87377 * 60.03822 * 14 13 12 22 22 H 1.08995 * 109.86891 * 181.02179 * 14 13 12 23 23 H 0.97007 * 120.65251 * 347.08284 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4402 0.7000 7 6 2.0094 -1.2021 -0.0005 8 1 3.0894 -1.2020 -0.0010 9 16 1.1285 -2.7280 -0.0005 10 6 2.4782 -3.8606 -0.0005 11 7 3.6840 -3.3943 -0.0011 12 6 4.8770 -4.2329 -0.0220 13 6 4.5505 -5.6459 0.4665 14 6 3.3101 -6.1468 -0.2886 15 7 2.2124 -5.2107 0.0000 16 1 -0.4850 0.8400 0.0004 17 1 5.6356 -3.7948 0.6265 18 1 5.2620 -4.2848 -1.0404 19 1 4.3443 -5.6250 1.5367 20 1 5.3935 -6.3069 0.2656 21 1 3.5105 -6.1645 -1.3599 22 1 3.0458 -7.1468 0.0553 23 1 1.3189 -5.5388 0.1869 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306912877.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = -11.679662 kcal Electronic energy + Delta-G solvation = -9301.580364 eV Core-core repulsion = 7467.611412 eV Total energy + Delta-G solvation = -1833.968952 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.65514 -34.62602 -33.54535 -32.76790 -27.69584 -25.95767 -24.39684 -20.35653 -19.62771 -18.42120 -16.83779 -16.50950 -16.13057 -15.29588 -14.48799 -14.42276 -14.27426 -13.32386 -13.13509 -12.89938 -12.73868 -12.15647 -11.78723 -11.71697 -11.07030 -10.69116 -9.71988 -9.19918 -8.59199 -8.38036 -6.14480 1.17354 1.41149 1.42616 1.57147 1.69159 2.22617 2.78554 3.02095 3.35946 3.92291 4.02582 4.21746 4.57019 4.64150 4.68336 4.82239 5.03617 5.22830 5.63633 5.83686 6.44570 6.81332 7.10858 7.56590 8.72170 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.068012 B = 0.012111 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.595117 B = 2311.474454 C = 2682.828554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.093 0.907 9 S 0.017 5.983 10 C 0.377 3.623 11 N -0.658 5.658 12 C 0.060 3.940 13 C -0.158 4.158 14 C 0.119 3.881 15 N -0.752 5.752 16 H 0.274 0.726 17 H 0.069 0.931 18 H 0.058 0.942 19 H 0.056 0.944 20 H 0.106 0.894 21 H 0.056 0.944 22 H 0.116 0.884 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -9.949 0.019 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.682 4.682 8 H 0.111 0.889 9 S 0.250 5.750 10 C -0.008 4.008 11 N -0.393 5.393 12 C -0.074 4.074 13 C -0.197 4.197 14 C -0.007 4.007 15 N -0.397 5.397 16 H 0.083 0.917 17 H 0.087 0.913 18 H 0.076 0.924 19 H 0.075 0.925 20 H 0.125 0.875 21 H 0.074 0.926 22 H 0.134 0.866 23 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.736 -9.318 -0.013 10.452 hybrid contribution 1.217 0.251 0.064 1.244 sum 5.953 -9.067 0.050 10.846 Atomic orbital electron populations 1.70037 1.07321 1.28888 1.48657 1.25988 0.95995 1.02752 0.93657 0.85013 0.78086 0.76505 0.78734 1.19402 1.19581 1.19511 1.23386 0.96786 0.90465 1.57527 0.88882 1.83299 1.04104 0.98262 1.89308 1.24556 0.97456 0.86793 0.92001 1.71699 0.97900 1.36673 1.33017 1.21790 0.93321 0.92094 1.00149 1.22328 0.99717 0.97723 0.99961 1.21780 0.86496 0.93373 0.99013 1.45313 1.13169 1.02508 1.78709 0.91675 0.91293 0.92385 0.92475 0.87548 0.92585 0.86590 0.75765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.73 13.22 21.64 0.29 -53.45 14 2 C 0.02 1.18 5.49 84.87 0.47 1.64 14 3 Si 0.99 45.38 29.55 68.60 2.03 47.41 14 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 14 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 14 7 C -0.53 -31.51 9.23 67.96 0.63 -30.89 14 8 H 0.09 5.67 6.52 -2.91 -0.02 5.66 14 9 S 0.02 0.90 21.79 -56.49 -1.23 -0.33 14 10 C 0.38 17.11 7.80 179.78 1.40 18.52 14 11 N -0.66 -31.17 8.66 -348.96 -3.02 -34.19 14 12 C 0.06 2.15 7.19 86.52 0.62 2.77 14 13 C -0.16 -4.24 6.25 30.81 0.19 -4.05 14 14 C 0.12 3.05 7.21 86.47 0.62 3.67 14 15 N -0.75 -25.61 5.77 -345.30 -1.99 -27.61 14 16 H 0.27 14.98 8.31 -92.71 -0.77 14.21 14 17 H 0.07 2.42 8.14 -2.39 -0.02 2.40 14 18 H 0.06 1.99 8.14 -2.39 -0.02 1.97 14 19 H 0.06 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.11 2.07 8.14 -2.39 -0.02 2.05 14 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 14 22 H 0.12 2.03 8.14 -2.39 -0.02 2.01 14 23 H 0.41 12.13 8.89 -92.70 -0.82 11.31 14 Total: -1.00 -67.91 216.06 0.39 -67.52 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.39 Total: 8.99 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 3.93 Total: -8.33 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.73 Total: -115.25 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.23 Total: -0.33 kcal Total: -67.91 0.39 -67.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306912877.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.836 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds