Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.46489 * 2 1 4 4 C 1.54165 * 110.52141 * 237.38092 * 2 1 3 5 5 N 1.47245 * 103.27916 * 241.36521 * 4 2 1 6 6 C 1.36913 * 108.35689 * 359.97438 * 5 4 2 7 7 S 1.76205 * 122.88436 * 179.97438 * 6 5 4 8 8 C 1.76199 * 99.99960 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00024 * 0.02562 * 8 7 6 10 10 C 1.38799 * 120.00237 * 180.02562 * 8 7 6 11 11 N 1.31537 * 119.99870 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00548 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46914 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47193 * 119.99534 * 12 10 8 15 15 H 1.48502 * 109.47532 * 240.00206 * 12 10 8 16 16 N 1.29322 * 114.23392 * 0.02562 * 6 5 4 17 17 H 1.09002 * 109.47153 * 182.62025 * 1 2 3 18 18 H 1.09001 * 109.46832 * 62.62216 * 1 2 3 19 19 H 1.09004 * 109.47261 * 302.62197 * 1 2 3 20 20 H 1.09006 * 110.65109 * 359.80606 * 4 2 1 21 21 H 1.08995 * 110.65757 * 122.91108 * 4 2 1 22 22 H 0.97003 * 125.82283 * 180.02562 * 5 4 2 23 23 H 0.96999 * 120.00333 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0704 -0.7783 -1.2161 5 7 2.8322 -1.8787 -0.6021 6 6 2.7463 -1.7557 0.7588 7 16 3.5231 -2.8794 1.8718 8 6 3.0332 -2.1739 3.4103 9 1 2.4182 -1.2863 3.4259 10 6 3.4377 -2.7589 4.6022 11 7 4.1863 -3.8403 4.5833 12 14 2.9178 -2.0115 6.2333 13 1 2.0843 -0.8082 5.9831 14 1 2.1316 -3.0068 7.0057 15 1 4.1244 -1.6249 7.0078 16 7 2.0453 -0.7447 1.1573 17 1 -0.3633 -1.0266 0.0470 18 1 -0.3633 0.4726 -0.9126 19 1 -0.3634 0.5540 0.8656 20 1 1.2499 -1.1680 -1.8187 21 1 2.7242 -0.1465 -1.8173 22 1 3.3134 -2.5720 -1.0802 23 1 4.4694 -4.2490 5.4162 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307080514.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = -3.202090 kcal Electronic energy + Delta-G solvation = -9263.673333 eV Core-core repulsion = 7430.071996 eV Total energy + Delta-G solvation = -1833.601337 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.56234 -34.66795 -33.28998 -31.86594 -27.65502 -27.13779 -22.83193 -21.37541 -19.92954 -18.46330 -16.88515 -16.50503 -15.72952 -15.23857 -14.61202 -14.14322 -13.43329 -13.18316 -13.01420 -12.80474 -12.66808 -12.61795 -12.19070 -11.83573 -11.16425 -10.76781 -10.45429 -9.19672 -8.63108 -8.43106 -6.21378 1.07916 1.38783 1.40652 1.57884 1.64632 2.19467 2.84815 2.97235 3.30216 3.69494 4.16206 4.32587 4.50257 4.60546 4.79948 4.98839 5.15317 5.34836 5.51894 5.60544 6.35606 6.85113 7.05433 7.21520 8.67095 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.058055 B = 0.012389 C = 0.010489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.188772 B = 2259.523127 C = 2668.932332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.036 3.964 3 H 0.082 0.918 4 C 0.091 3.909 5 N -0.744 5.744 6 C 0.337 3.663 7 S 0.044 5.956 8 C -0.542 4.542 9 H 0.089 0.911 10 C 0.024 3.976 11 N -0.909 5.909 12 Si 0.995 3.005 13 H -0.271 1.271 14 H -0.268 1.268 15 H -0.268 1.268 16 N -0.621 5.621 17 H 0.036 0.964 18 H 0.091 0.909 19 H 0.048 0.952 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.420 0.580 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 4.438 -8.982 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 H 0.100 0.900 4 C -0.036 4.036 5 N -0.392 5.392 6 C -0.048 4.048 7 S 0.276 5.724 8 C -0.690 4.690 9 H 0.107 0.893 10 C -0.181 4.181 11 N -0.546 5.546 12 Si 0.817 3.183 13 H -0.195 1.195 14 H -0.193 1.193 15 H -0.193 1.193 16 N -0.358 5.358 17 H 0.056 0.944 18 H 0.109 0.891 19 H 0.067 0.933 20 H 0.107 0.893 21 H 0.105 0.895 22 H 0.260 0.740 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.439 3.883 -8.329 9.812 hybrid contribution -0.483 0.787 0.179 0.940 sum -3.922 4.669 -8.149 10.178 Atomic orbital electron populations 1.21713 0.92843 1.01050 1.02504 1.22830 0.97230 0.98702 0.88932 0.89968 1.22757 0.96182 0.88840 0.95850 1.45897 1.58092 1.32639 1.02599 1.25783 0.94321 0.96693 0.87976 1.83329 1.61019 1.30305 0.97710 1.23370 1.38341 1.16666 0.90652 0.89267 1.25975 0.94162 0.95052 1.02904 1.70019 1.34779 1.20214 1.29571 0.84950 0.78407 0.78348 0.76547 1.19520 1.19333 1.19341 1.74877 1.22697 1.10931 1.27317 0.94444 0.89060 0.93253 0.89306 0.89489 0.74000 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 9.41 71.98 0.68 -2.93 14 2 C 0.04 1.25 4.37 45.30 0.20 1.45 14 3 H 0.08 2.69 8.14 -2.39 -0.02 2.67 14 4 C 0.09 2.54 7.75 86.63 0.67 3.21 14 5 N -0.74 -25.66 6.56 -344.65 -2.26 -27.92 14 6 C 0.34 15.37 8.01 179.99 1.44 16.82 14 7 S 0.04 2.29 21.89 -56.49 -1.24 1.05 14 8 C -0.54 -31.80 9.31 67.95 0.63 -31.16 14 9 H 0.09 5.43 6.74 -2.91 -0.02 5.41 14 10 C 0.02 1.37 5.49 84.87 0.47 1.84 14 11 N -0.91 -52.89 13.22 21.64 0.29 -52.60 14 12 Si 1.00 44.88 29.55 68.60 2.03 46.91 14 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 14 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 15 H -0.27 -11.50 7.11 99.48 0.71 -10.80 14 16 N -0.62 -29.19 9.72 -324.79 -3.16 -32.34 14 17 H 0.04 1.19 8.14 -2.39 -0.02 1.17 14 18 H 0.09 1.91 8.14 -2.39 -0.02 1.89 14 19 H 0.05 1.52 8.14 -2.38 -0.02 1.50 14 20 H 0.09 2.05 7.74 -2.38 -0.02 2.03 14 21 H 0.09 2.00 8.14 -2.39 -0.02 1.98 14 22 H 0.42 12.23 8.96 -92.71 -0.83 11.40 14 23 H 0.28 14.84 8.31 -92.71 -0.77 14.07 14 Total: -1.00 -66.84 219.06 0.13 -66.71 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.38 Total: 8.97 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.09 Total: -10.78 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -5.13 Total: -112.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.24 Total: 1.05 kcal Total: -66.84 0.13 -66.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307080514.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.511 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds