Wall clock time and date at job start Mon Mar 30 2020 01:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.46026 * 2 1 4 4 C 1.54167 * 110.63200 * 122.69805 * 2 1 3 5 5 N 1.47242 * 103.28231 * 118.46109 * 4 2 1 6 6 C 1.36916 * 108.35511 * 0.38656 * 5 4 2 7 7 S 1.76195 * 122.88582 * 179.83619 * 6 5 4 8 8 C 1.76208 * 99.99980 * 179.73499 * 7 6 5 9 9 H 1.07997 * 119.99714 * 359.72214 * 8 7 6 10 10 C 1.38805 * 119.99864 * 180.02562 * 8 7 6 11 11 N 1.31536 * 119.99890 * 179.72251 * 10 8 7 12 12 Si 1.86803 * 119.99953 * 359.71854 * 10 8 7 13 13 H 1.48500 * 109.46986 * 90.00492 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00509 * 12 10 8 15 15 H 1.48499 * 109.47352 * 330.00339 * 12 10 8 16 16 N 1.29331 * 114.22892 * 359.56554 * 6 5 4 17 17 H 1.09004 * 109.46878 * 181.16607 * 1 2 3 18 18 H 1.08997 * 109.47170 * 301.16814 * 1 2 3 19 19 H 1.08994 * 109.46853 * 61.17270 * 1 2 3 20 20 H 1.09003 * 110.65584 * 237.14735 * 4 2 1 21 21 H 1.09005 * 110.65634 * 0.24459 * 4 2 1 22 22 H 0.97003 * 125.82072 * 180.22192 * 5 4 2 23 23 H 0.97000 * 119.99661 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0733 -0.7794 1.2141 5 7 2.8316 -1.8806 0.5975 6 6 2.7484 -1.7525 -0.7631 7 16 3.5264 -2.8724 -1.8789 8 6 3.0339 -2.1649 -3.4157 9 1 2.4138 -1.2809 -3.4290 10 6 3.4377 -2.7476 -4.6090 11 7 3.0655 -2.2226 -5.7562 12 14 4.5099 -4.2771 -4.5858 13 1 3.6474 -5.4860 -4.5755 14 1 5.3728 -4.2951 -5.7942 15 1 5.3616 -4.2663 -3.3695 16 7 2.0450 -0.7420 -1.1590 17 1 -0.3633 -1.0275 0.0209 18 1 -0.3633 0.5319 0.8793 19 1 -0.3633 0.4955 -0.9003 20 1 2.7266 -0.1474 1.8158 21 1 1.2542 -1.1716 1.8171 22 1 3.3106 -2.5767 1.0740 23 1 3.3481 -2.6296 -6.5902 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307080517.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:35 Heat of formation + Delta-G solvation = 23.079069 kcal Electronic energy + Delta-G solvation = -9276.647687 eV Core-core repulsion = 7444.185986 eV Total energy + Delta-G solvation = -1832.461701 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.14223 -32.50663 -31.93791 -30.39223 -25.89065 -25.61797 -21.41209 -19.94464 -18.15733 -16.66474 -15.20164 -15.03279 -14.05204 -13.63296 -12.96846 -12.80810 -12.15242 -11.55777 -11.41462 -11.36703 -11.06798 -10.89204 -10.76757 -10.00705 -9.09203 -8.98561 -8.81673 -7.75083 -7.01281 -6.28412 -4.07770 2.53493 3.19097 3.25097 3.32219 3.34506 4.11999 4.25528 4.70151 4.99694 5.09615 5.37519 5.57881 5.70003 5.81122 6.00900 6.28375 6.46950 6.62281 6.92726 7.97495 8.19018 8.69025 8.83671 9.12134 10.80867 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.068395 B = 0.012438 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.286707 B = 2250.551172 C = 2585.081677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H 0.079 0.921 4 C 0.087 3.913 5 N -0.755 5.755 6 C 0.359 3.641 7 S -0.004 6.004 8 C -0.511 4.511 9 H 0.123 0.877 10 C 0.097 3.903 11 N -0.869 5.869 12 Si 0.844 3.156 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.240 1.240 16 N -0.562 5.562 17 H 0.051 0.949 18 H 0.051 0.949 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.408 0.592 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -0.343 11.584 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 H 0.097 0.903 4 C -0.041 4.041 5 N -0.402 5.402 6 C -0.025 4.025 7 S 0.228 5.772 8 C -0.659 4.659 9 H 0.140 0.860 10 C -0.113 4.113 11 N -0.505 5.505 12 Si 0.669 3.331 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.164 1.164 16 N -0.297 5.297 17 H 0.070 0.930 18 H 0.070 0.930 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.246 0.754 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.065 -0.751 10.775 10.801 hybrid contribution 0.053 -0.063 0.647 0.652 sum -0.012 -0.814 11.422 11.450 Atomic orbital electron populations 1.21751 0.94299 1.01619 1.01282 1.22615 0.95958 0.98747 0.89167 0.90282 1.22575 0.95254 0.89542 0.96722 1.45876 1.58649 1.31663 1.04021 1.25397 0.94463 0.96678 0.85952 1.82949 1.61404 1.32200 1.00610 1.22560 1.38385 1.18040 0.86948 0.85963 1.24717 0.95227 0.96842 0.94477 1.69878 1.43619 1.39784 0.97264 0.86972 0.81918 0.83992 0.80218 1.19000 1.19350 1.16421 1.75023 1.21083 1.09734 1.23836 0.93011 0.93003 0.91881 0.92091 0.91867 0.75433 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.42 37.16 0.35 -1.71 14 2 C 0.05 0.88 4.36 -67.08 -0.29 0.59 14 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 14 4 C 0.09 1.32 7.76 -3.03 -0.02 1.30 14 5 N -0.75 -13.11 6.56 -60.29 -0.40 -13.50 14 6 C 0.36 8.01 8.01 -89.60 -0.72 7.29 14 7 S 0.00 -0.09 19.87 -107.50 -2.14 -2.23 14 8 C -0.51 -14.91 9.86 30.94 0.30 -14.61 14 9 H 0.12 3.97 6.97 -52.49 -0.37 3.60 14 10 C 0.10 2.78 5.50 -17.47 -0.10 2.68 14 11 N -0.87 -26.18 13.96 55.49 0.77 -25.40 14 12 Si 0.84 20.24 27.73 -169.99 -4.71 15.53 14 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 14 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 14 15 H -0.24 -5.48 6.74 56.52 0.38 -5.10 14 16 N -0.56 -13.27 9.71 -54.01 -0.52 -13.79 14 17 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 14 19 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 20 H 0.06 0.80 8.14 -51.93 -0.42 0.37 14 21 H 0.06 0.83 7.74 -51.93 -0.40 0.43 14 22 H 0.41 5.91 8.96 -40.82 -0.37 5.54 14 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 14 LS Contribution 216.39 15.07 3.26 3.26 Total: -1.00 -31.46 216.39 -6.61 -38.07 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.40 Total: 2.53 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.47 Total: -4.46 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.15 Total: -52.70 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.14 Total: -2.23 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -31.46 -6.61 -38.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307080517.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds