Wall clock time and date at job start Mon Mar 30 2020 01:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.46026 * 2 1 4 4 C 1.54167 * 110.63200 * 122.69805 * 2 1 3 5 5 N 1.47242 * 103.28231 * 118.46109 * 4 2 1 6 6 C 1.36916 * 108.35511 * 0.38656 * 5 4 2 7 7 S 1.76195 * 122.88582 * 179.83619 * 6 5 4 8 8 C 1.76208 * 99.99980 * 179.73499 * 7 6 5 9 9 H 1.07997 * 119.99714 * 359.72214 * 8 7 6 10 10 C 1.38805 * 119.99864 * 180.02562 * 8 7 6 11 11 N 1.31536 * 119.99890 * 179.72251 * 10 8 7 12 12 Si 1.86803 * 119.99953 * 359.71854 * 10 8 7 13 13 H 1.48500 * 109.46986 * 90.00492 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00509 * 12 10 8 15 15 H 1.48499 * 109.47352 * 330.00339 * 12 10 8 16 16 N 1.29331 * 114.22892 * 359.56554 * 6 5 4 17 17 H 1.09004 * 109.46878 * 181.16607 * 1 2 3 18 18 H 1.08997 * 109.47170 * 301.16814 * 1 2 3 19 19 H 1.08994 * 109.46853 * 61.17270 * 1 2 3 20 20 H 1.09003 * 110.65584 * 237.14735 * 4 2 1 21 21 H 1.09005 * 110.65634 * 0.24459 * 4 2 1 22 22 H 0.97003 * 125.82072 * 180.22192 * 5 4 2 23 23 H 0.97000 * 119.99661 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0733 -0.7794 1.2141 5 7 2.8316 -1.8806 0.5975 6 6 2.7484 -1.7525 -0.7631 7 16 3.5264 -2.8724 -1.8789 8 6 3.0339 -2.1649 -3.4157 9 1 2.4138 -1.2809 -3.4290 10 6 3.4377 -2.7476 -4.6090 11 7 3.0655 -2.2226 -5.7562 12 14 4.5099 -4.2771 -4.5858 13 1 3.6474 -5.4860 -4.5755 14 1 5.3728 -4.2951 -5.7942 15 1 5.3616 -4.2663 -3.3695 16 7 2.0450 -0.7420 -1.1590 17 1 -0.3633 -1.0275 0.0209 18 1 -0.3633 0.5319 0.8793 19 1 -0.3633 0.4955 -0.9003 20 1 2.7266 -0.1474 1.8158 21 1 1.2542 -1.1716 1.8171 22 1 3.3106 -2.5767 1.0740 23 1 3.3481 -2.6296 -6.5902 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307080517.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:35 Heat of formation + Delta-G solvation = -1.180056 kcal Electronic energy + Delta-G solvation = -9277.699642 eV Core-core repulsion = 7444.185986 eV Total energy + Delta-G solvation = -1833.513655 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.63600 -34.69290 -33.34977 -31.93292 -27.85191 -27.19168 -22.93935 -21.46136 -19.98719 -18.46126 -17.08408 -16.55352 -15.69542 -15.12569 -14.87258 -14.28460 -13.60164 -13.29461 -13.13054 -12.90653 -12.70342 -12.63774 -12.21337 -11.87722 -11.16067 -10.97477 -10.48337 -9.39721 -8.79179 -8.46354 -6.27330 0.76103 1.34353 1.40437 1.51863 1.56559 2.21373 2.41292 2.91112 3.01513 3.64629 4.13831 4.29659 4.47612 4.59070 4.77368 4.96274 5.10900 5.32502 5.48768 5.80656 6.44665 6.81824 6.91760 7.16419 8.67328 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.068395 B = 0.012438 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.286707 B = 2250.551172 C = 2585.081677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.035 3.965 3 H 0.083 0.917 4 C 0.093 3.907 5 N -0.740 5.740 6 C 0.350 3.650 7 S 0.018 5.982 8 C -0.537 4.537 9 H 0.073 0.927 10 C 0.041 3.959 11 N -0.917 5.917 12 Si 0.915 3.085 13 H -0.255 1.255 14 H -0.258 1.258 15 H -0.220 1.220 16 N -0.617 5.617 17 H 0.040 0.960 18 H 0.094 0.906 19 H 0.043 0.957 20 H 0.091 0.909 21 H 0.092 0.908 22 H 0.423 0.577 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -1.365 13.862 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 H 0.101 0.899 4 C -0.034 4.034 5 N -0.389 5.389 6 C -0.036 4.036 7 S 0.250 5.750 8 C -0.686 4.686 9 H 0.091 0.909 10 C -0.164 4.164 11 N -0.555 5.555 12 Si 0.735 3.265 13 H -0.179 1.179 14 H -0.182 1.182 15 H -0.143 1.143 16 N -0.353 5.353 17 H 0.059 0.941 18 H 0.112 0.888 19 H 0.062 0.938 20 H 0.109 0.891 21 H 0.110 0.890 22 H 0.264 0.736 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.633 -1.767 13.100 13.234 hybrid contribution -0.272 0.414 0.017 0.496 sum 0.360 -1.354 13.117 13.192 Atomic orbital electron populations 1.21714 0.92818 1.01286 1.02368 1.22862 0.97282 0.98804 0.88835 0.89937 1.22753 0.96339 0.88753 0.95538 1.45857 1.58379 1.32511 1.02179 1.25177 0.94439 0.96328 0.87613 1.82307 1.62093 1.32660 0.97930 1.22604 1.38280 1.17257 0.90417 0.90916 1.25756 0.96512 1.00479 0.93673 1.70007 1.45217 1.41938 0.98316 0.85915 0.80169 0.79081 0.81384 1.17930 1.18163 1.14320 1.74961 1.21766 1.10872 1.27671 0.94099 0.88764 0.93810 0.89122 0.88985 0.73624 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 9.42 71.98 0.68 -3.02 14 2 C 0.04 1.22 4.36 45.30 0.20 1.42 14 3 H 0.08 2.74 8.14 -2.39 -0.02 2.72 14 4 C 0.09 2.47 7.76 86.63 0.67 3.14 14 5 N -0.74 -23.67 6.56 -344.65 -2.26 -25.93 14 6 C 0.35 15.36 8.01 179.99 1.44 16.80 14 7 S 0.02 0.85 19.87 -56.49 -1.12 -0.27 14 8 C -0.54 -32.28 9.86 67.96 0.67 -31.61 14 9 H 0.07 4.99 6.97 -2.91 -0.02 4.97 14 10 C 0.04 2.40 5.50 84.87 0.47 2.87 14 11 N -0.92 -56.91 13.96 21.64 0.30 -56.61 14 12 Si 0.91 41.48 27.73 68.60 1.90 43.38 14 13 H -0.26 -11.11 7.11 99.48 0.71 -10.40 14 14 H -0.26 -11.11 7.11 99.48 0.71 -10.41 14 15 H -0.22 -9.18 6.74 99.48 0.67 -8.51 14 16 N -0.62 -29.36 9.71 -324.80 -3.16 -32.52 14 17 H 0.04 1.29 8.14 -2.38 -0.02 1.27 14 18 H 0.09 1.99 8.14 -2.39 -0.02 1.97 14 19 H 0.04 1.44 8.14 -2.39 -0.02 1.42 14 20 H 0.09 1.93 8.14 -2.39 -0.02 1.91 14 21 H 0.09 1.98 7.74 -2.38 -0.02 1.96 14 22 H 0.42 10.83 8.96 -92.71 -0.83 10.00 14 23 H 0.28 15.74 8.31 -92.71 -0.77 14.97 14 Total: -1.00 -70.63 216.39 0.14 -70.49 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.35 Total: 11.87 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.13 Total: -10.41 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.11 Total: -115.06 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.90 Total: 43.38 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -1.12 Total: -0.27 kcal Total: -70.63 0.14 -70.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307080517.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.308 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds