Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.99060 * 2 1 4 4 O 1.44048 * 109.92667 * 238.74965 * 2 1 3 5 5 C 1.44373 * 106.98327 * 214.02498 * 4 2 1 6 6 C 1.54997 * 103.49089 * 40.13700 * 5 4 2 7 7 C 1.54098 * 109.87776 * 121.08562 * 2 1 3 8 8 O 1.42907 * 110.48599 * 240.26633 * 7 2 1 9 9 C 1.50706 * 110.48982 * 2.77527 * 7 2 1 10 10 H 1.07997 * 119.99562 * 358.16223 * 9 7 2 11 11 C 1.37877 * 120.00159 * 178.15765 * 9 7 2 12 12 N 1.31510 * 119.99756 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00022 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46864 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47213 * 119.99855 * 13 11 9 16 16 H 1.48493 * 109.46786 * 240.00161 * 13 11 9 17 17 H 1.08999 * 109.47158 * 298.91649 * 1 2 3 18 18 H 1.09006 * 109.46828 * 58.91870 * 1 2 3 19 19 H 1.08996 * 109.47040 * 178.91526 * 1 2 3 20 20 H 1.08997 * 109.47282 * 181.08149 * 3 2 1 21 21 H 1.09001 * 109.46881 * 301.08391 * 3 2 1 22 22 H 1.08997 * 109.46921 * 61.08313 * 3 2 1 23 23 H 1.09003 * 110.61991 * 281.64111 * 5 4 2 24 24 H 1.08998 * 110.75963 * 158.70837 * 5 4 2 25 25 H 1.08997 * 110.90882 * 204.77977 * 6 5 4 26 26 H 1.09005 * 110.90637 * 81.17880 * 6 5 4 27 27 H 0.96695 * 113.99674 * 181.84763 * 8 7 2 28 28 H 0.96998 * 119.99911 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0210 -0.7025 -1.1577 5 6 3.2406 -1.3664 -0.7624 6 6 2.9216 -1.8914 0.6606 7 6 2.0540 -0.7482 1.2411 8 8 2.8484 0.1210 2.0507 9 6 0.9073 -1.3105 2.0412 10 1 -0.1100 -1.1322 1.7255 11 6 1.1570 -2.0524 3.1762 12 7 2.3958 -2.2690 3.5608 13 14 -0.2643 -2.7499 4.1676 14 1 -1.5488 -2.3660 3.5287 15 1 -0.1566 -4.2302 4.2133 16 1 -0.2175 -2.2072 5.5490 17 1 -0.3633 0.4969 0.8995 18 1 -0.3633 0.5306 -0.8802 19 1 -0.3633 -1.0274 -0.0195 20 1 3.1428 1.4280 -0.0194 21 1 1.6787 1.9606 -0.8801 22 1 1.7103 1.9491 0.8995 23 1 4.0702 -0.6600 -0.7338 24 1 3.4656 -2.1938 -1.4353 25 1 3.8348 -2.0201 1.2415 26 1 2.3573 -2.8229 0.6141 27 1 3.2274 -0.3059 2.8312 28 1 2.5715 -2.7913 4.3591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307120069.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -117.455694 kcal Electronic energy + Delta-G solvation = -12512.467022 eV Core-core repulsion = 10334.698749 eV Total energy + Delta-G solvation = -2177.768273 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.83012 -36.76212 -34.16121 -33.67546 -31.44652 -28.87551 -27.07131 -25.25961 -22.52887 -20.58516 -18.69369 -17.26325 -16.90287 -16.72282 -15.82848 -15.52532 -14.60232 -14.27873 -13.75784 -13.42923 -13.32043 -13.12125 -13.01952 -12.75707 -12.45603 -12.23291 -12.08846 -11.78144 -11.50124 -10.88506 -10.67969 -10.29582 -10.05104 -8.20139 -6.32116 1.39562 1.43658 1.53476 2.39966 3.05602 3.09113 3.87895 4.13446 4.26859 4.35748 4.44661 4.59873 4.73746 4.78509 4.91464 5.02900 5.08064 5.21159 5.37263 5.47050 5.50062 5.60102 5.81369 6.09278 6.23881 6.72713 7.37140 7.45975 8.86757 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049207 B = 0.016745 C = 0.015476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.892823 B = 1671.730255 C = 1808.872778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.098 3.902 3 C -0.131 4.131 4 O -0.390 6.390 5 C 0.046 3.954 6 C -0.147 4.147 7 C 0.219 3.781 8 O -0.587 6.587 9 C -0.558 4.558 10 H 0.080 0.920 11 C 0.025 3.975 12 N -0.917 5.917 13 Si 0.956 3.044 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.282 1.282 17 H 0.067 0.933 18 H 0.061 0.939 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.374 0.626 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 1.890 -4.202 4.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.060 3.940 3 C -0.188 4.188 4 O -0.310 6.310 5 C -0.030 4.030 6 C -0.186 4.186 7 C 0.179 3.821 8 O -0.396 6.396 9 C -0.596 4.596 10 H 0.098 0.902 11 C -0.174 4.174 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 H 0.085 0.915 18 H 0.080 0.920 19 H 0.073 0.927 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.224 0.776 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.916 2.245 -4.740 5.324 hybrid contribution -0.092 -1.058 1.469 1.813 sum -1.008 1.186 -3.271 3.623 Atomic orbital electron populations 1.21753 0.92584 1.01866 1.01142 1.22230 0.95249 0.92214 0.84355 1.21764 1.00664 0.95197 1.01198 1.88785 1.40243 1.67791 1.34173 1.23584 0.87210 0.96225 0.95988 1.23407 0.99917 0.99763 0.95507 1.20014 0.88469 0.85506 0.88126 1.86113 1.70078 1.42092 1.41298 1.22381 0.94655 1.32607 1.09951 0.90217 1.25732 0.98012 0.95565 0.98127 1.69767 1.19748 1.40848 1.25394 0.85527 0.80016 0.77798 0.78415 1.19153 1.20850 1.20757 0.91456 0.92040 0.92725 0.93539 0.91875 0.92201 0.92593 0.87954 0.92379 0.93192 0.77600 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 7.38 71.98 0.53 -4.16 15 2 C 0.10 4.32 1.20 -10.42 -0.01 4.30 15 3 C -0.13 -5.16 7.88 71.98 0.57 -4.59 15 4 O -0.39 -16.79 10.88 -148.98 -1.62 -18.41 15 5 C 0.05 1.83 7.67 72.67 0.56 2.39 15 6 C -0.15 -6.93 5.53 31.89 0.18 -6.75 15 7 C 0.22 10.80 0.97 -10.55 -0.01 10.79 15 8 O -0.59 -29.96 11.20 -148.98 -1.67 -31.63 15 9 C -0.56 -29.32 7.26 25.60 0.19 -29.13 15 10 H 0.08 4.08 4.73 -2.91 -0.01 4.07 15 11 C 0.03 1.32 5.27 84.66 0.45 1.77 15 12 N -0.92 -48.93 10.96 21.45 0.24 -48.69 15 13 Si 0.96 41.95 29.54 68.60 2.03 43.98 15 14 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 17 H 0.07 2.72 7.26 -2.39 -0.02 2.70 15 18 H 0.06 2.11 8.14 -2.38 -0.02 2.09 15 19 H 0.05 2.29 6.99 -2.39 -0.02 2.28 15 20 H 0.05 1.85 7.88 -2.39 -0.02 1.83 15 21 H 0.06 2.14 8.14 -2.39 -0.02 2.13 15 22 H 0.06 2.41 7.85 -2.39 -0.02 2.39 15 23 H 0.06 2.11 8.12 -2.39 -0.02 2.09 15 24 H 0.10 3.45 8.14 -2.39 -0.02 3.43 15 25 H 0.06 2.81 8.08 -2.39 -0.02 2.79 15 26 H 0.05 2.49 7.86 -2.38 -0.02 2.47 15 27 H 0.37 19.78 7.20 -74.06 -0.53 19.24 15 28 H 0.27 13.58 8.31 -92.71 -0.77 12.81 15 Total: -1.00 -55.64 225.75 2.03 -53.61 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.62 Total: 26.51 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 2.44 Total: -25.37 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.24 Total: -48.69 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -3.29 Total: -50.04 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -55.64 2.03 -53.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307120069.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.842 kcal (2) G-P(sol) polarization free energy of solvation -55.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds