Wall clock time and date at job start Mon Mar 30 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.87258 * 2 1 4 4 O 1.43749 * 109.87804 * 121.01031 * 2 1 3 5 5 C 1.44376 * 106.97825 * 145.93849 * 4 2 1 6 6 C 1.54997 * 103.62951 * 319.85775 * 5 4 2 7 7 C 1.54099 * 109.88218 * 238.83682 * 2 1 3 8 8 O 1.42900 * 110.49098 * 119.86793 * 7 2 1 9 9 C 1.50709 * 110.48627 * 357.35723 * 7 2 1 10 10 H 1.08003 * 119.99579 * 359.97438 * 9 7 2 11 11 C 1.37880 * 120.00063 * 179.97438 * 9 7 2 12 12 N 1.31512 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 119.99706 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47298 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46876 * 120.00454 * 13 11 9 16 16 H 1.48502 * 109.47313 * 240.00116 * 13 11 9 17 17 H 1.09001 * 109.47401 * 300.45024 * 1 2 3 18 18 H 1.09002 * 109.46885 * 60.44963 * 1 2 3 19 19 H 1.08999 * 109.46992 * 180.44311 * 1 2 3 20 20 H 1.09002 * 109.47130 * 179.54701 * 3 2 1 21 21 H 1.08997 * 109.46884 * 299.55015 * 3 2 1 22 22 H 1.09001 * 109.46572 * 59.55545 * 3 2 1 23 23 H 1.09002 * 110.62025 * 78.43911 * 5 4 2 24 24 H 1.09000 * 110.61614 * 201.27823 * 5 4 2 25 25 H 1.08997 * 110.90645 * 155.30251 * 6 5 4 26 26 H 1.08997 * 110.90760 * 278.90437 * 6 5 4 27 27 H 0.96695 * 114.00075 * 180.02562 * 8 7 2 28 28 H 0.96995 * 120.00064 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 2.0187 -0.6965 1.1586 5 6 3.2379 -1.3632 0.7666 6 6 2.9223 -1.8957 -0.6544 7 6 2.0540 -0.7499 -1.2400 8 8 2.8510 0.1173 -2.0492 9 6 0.9072 -1.3105 -2.0412 10 1 -0.1092 -1.1557 -1.7103 11 6 1.1555 -2.0208 -3.1965 12 7 2.3932 -2.2096 -3.5991 13 14 -0.2659 -2.7162 -4.1891 14 1 -1.5489 -2.3680 -3.5273 15 1 -0.2428 -2.1398 -5.5574 16 1 -0.1361 -4.1932 -4.2719 17 1 -0.3634 0.5208 0.8859 18 1 -0.3633 0.5068 -0.8940 19 1 -0.3633 -1.0276 0.0079 20 1 3.1400 1.4313 0.0081 21 1 1.6969 1.9528 -0.8940 22 1 1.6838 1.9575 0.8860 23 1 4.0685 -0.6580 0.7366 24 1 3.4598 -2.1871 1.4448 25 1 3.8370 -2.0287 -1.2319 26 1 2.3567 -2.8261 -0.6044 27 1 3.2067 -0.3032 -2.8441 28 1 2.5680 -2.7096 -4.4117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307120070.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:10 Heat of formation + Delta-G solvation = -117.437358 kcal Electronic energy + Delta-G solvation = -12510.954919 eV Core-core repulsion = 10333.187442 eV Total energy + Delta-G solvation = -2177.767478 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.83458 -36.77581 -34.13789 -33.67322 -31.46124 -28.87427 -27.07122 -25.25677 -22.53353 -20.58697 -18.71179 -17.27403 -16.90390 -16.71842 -15.82067 -15.52868 -14.60303 -14.26362 -13.76247 -13.41860 -13.31424 -13.13257 -13.01767 -12.75747 -12.46222 -12.23519 -12.09749 -11.79302 -11.50015 -10.89781 -10.67437 -10.29213 -10.04557 -8.20626 -6.32606 1.39644 1.43749 1.53639 2.39828 3.05007 3.10128 3.88793 4.12931 4.26635 4.35508 4.44666 4.59535 4.73946 4.78580 4.91536 5.03031 5.07618 5.20726 5.37252 5.45942 5.49735 5.59422 5.81515 6.09041 6.24263 6.72171 7.37358 7.47535 8.86357 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049268 B = 0.016717 C = 0.015459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.185332 B = 1674.567550 C = 1810.753920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.098 3.902 3 C -0.131 4.131 4 O -0.389 6.389 5 C 0.047 3.953 6 C -0.150 4.150 7 C 0.219 3.781 8 O -0.588 6.588 9 C -0.558 4.558 10 H 0.081 0.919 11 C 0.025 3.975 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.282 1.282 17 H 0.061 0.939 18 H 0.066 0.934 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.376 0.624 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 1.788 4.226 4.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.059 3.941 3 C -0.189 4.189 4 O -0.309 6.309 5 C -0.030 4.030 6 C -0.188 4.188 7 C 0.179 3.821 8 O -0.397 6.397 9 C -0.596 4.596 10 H 0.098 0.902 11 C -0.175 4.175 12 N -0.559 5.559 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.208 1.208 17 H 0.080 0.920 18 H 0.085 0.915 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.226 0.774 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.966 2.142 4.770 5.317 hybrid contribution -0.099 -1.038 -1.477 1.808 sum -1.064 1.104 3.292 3.632 Atomic orbital electron populations 1.21761 0.92611 1.01885 1.01126 1.22178 0.95262 0.92250 0.84383 1.21772 1.00675 0.95244 1.01162 1.88740 1.40304 1.67860 1.33993 1.23578 0.87208 0.96165 0.96011 1.23491 0.99930 0.99795 0.95601 1.20092 0.88384 0.85472 0.88131 1.86096 1.70737 1.42879 1.40023 1.22391 0.94754 1.33840 1.08595 0.90153 1.25740 0.98039 0.95469 0.98209 1.69713 1.19837 1.42007 1.24329 0.85513 0.79967 0.77783 0.78409 1.19135 1.20741 1.20841 0.92049 0.91485 0.92689 0.93573 0.92244 0.91872 0.92610 0.87943 0.92412 0.93113 0.77393 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 7.37 71.98 0.53 -4.17 15 2 C 0.10 4.31 1.19 -10.42 -0.01 4.30 15 3 C -0.13 -5.19 7.87 71.98 0.57 -4.62 15 4 O -0.39 -16.73 10.86 -148.98 -1.62 -18.35 15 5 C 0.05 1.85 7.66 72.67 0.56 2.41 15 6 C -0.15 -7.02 5.70 32.04 0.18 -6.84 15 7 C 0.22 10.84 0.98 -10.40 -0.01 10.83 15 8 O -0.59 -30.17 11.23 -148.98 -1.67 -31.85 15 9 C -0.56 -29.29 7.27 25.60 0.19 -29.11 15 10 H 0.08 4.11 4.72 -2.91 -0.01 4.10 15 11 C 0.02 1.30 5.27 84.66 0.45 1.75 15 12 N -0.92 -48.98 10.94 21.45 0.23 -48.75 15 13 Si 0.96 41.90 29.54 68.60 2.03 43.93 15 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 17 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 18 H 0.07 2.70 7.33 -2.39 -0.02 2.69 15 19 H 0.05 2.31 6.91 -2.39 -0.02 2.29 15 20 H 0.05 1.85 7.88 -2.39 -0.02 1.83 15 21 H 0.06 2.40 7.88 -2.39 -0.02 2.38 15 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.10 3.44 8.14 -2.39 -0.02 3.42 15 25 H 0.06 2.79 8.09 -2.39 -0.02 2.77 15 26 H 0.05 2.51 7.88 -2.39 -0.02 2.49 15 27 H 0.38 20.01 7.02 -74.06 -0.52 19.49 15 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 Total: -1.00 -55.62 225.77 2.05 -53.58 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.63 Total: 26.89 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 2.45 Total: -25.46 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.23 Total: -48.75 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -3.29 Total: -50.19 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -55.62 2.05 -53.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307120070.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.859 kcal (2) G-P(sol) polarization free energy of solvation -55.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds