Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.55526 * 2 1 4 4 C 1.54999 * 110.61540 * 237.12087 * 2 1 3 5 5 C 1.54809 * 102.09101 * 204.32007 * 4 2 1 6 6 O 1.42901 * 110.48674 * 262.20314 * 5 4 2 7 7 C 1.50706 * 110.48896 * 139.69211 * 5 4 2 8 8 H 1.07999 * 119.99639 * 237.57002 * 7 5 4 9 9 C 1.37879 * 120.00109 * 57.56605 * 7 5 4 10 10 N 1.31521 * 119.99690 * 5.30067 * 9 7 5 11 11 Si 1.86791 * 120.00151 * 185.30059 * 9 7 5 12 12 H 1.48500 * 109.47226 * 94.97296 * 11 9 7 13 13 H 1.48494 * 109.47329 * 214.97373 * 11 9 7 14 14 H 1.48509 * 109.47133 * 334.97646 * 11 9 7 15 15 C 1.54097 * 104.30657 * 20.94698 * 5 4 2 16 16 H 1.08998 * 109.87784 * 121.38662 * 15 5 4 17 17 C 1.52999 * 109.88096 * 242.53850 * 15 5 4 18 18 O 1.44033 * 107.14135 * 1.91485 * 15 5 4 19 19 H 1.08998 * 109.47313 * 182.87805 * 1 2 3 20 20 H 1.09005 * 109.46996 * 302.88066 * 1 2 3 21 21 H 1.09000 * 109.47619 * 62.87646 * 1 2 3 22 22 H 1.08999 * 110.90704 * 86.11893 * 4 2 1 23 23 H 1.09002 * 110.90755 * 322.51535 * 4 2 1 24 24 H 0.96696 * 114.00098 * 296.75812 * 6 5 4 25 25 H 0.97002 * 119.99352 * 179.97438 * 10 9 7 26 26 H 1.09003 * 109.46863 * 59.99805 * 17 15 5 27 27 H 1.08995 * 109.47502 * 179.97438 * 17 15 5 28 28 H 1.08997 * 109.47234 * 300.00245 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7876 -1.2184 5 6 3.4810 -1.2122 -0.7269 6 8 4.4763 -0.3137 -1.2211 7 6 3.7861 -2.6238 -1.1575 8 1 4.0269 -3.3737 -0.4185 9 6 3.7578 -2.9580 -2.4949 10 7 3.5676 -2.0248 -3.4020 11 14 3.9894 -4.7361 -3.0184 12 1 2.6616 -5.3775 -3.1935 13 1 4.7341 -4.7810 -4.3024 14 1 4.7567 -5.4633 -1.9754 15 6 3.3899 -1.1245 0.8089 16 1 3.6129 -2.0962 1.2494 17 6 4.3747 -0.0757 1.3294 18 8 2.0416 -0.7348 1.1326 19 1 -0.3634 -1.0263 0.0516 20 1 -0.3633 0.5579 0.8631 21 1 -0.3634 0.4685 -0.9146 22 1 2.1482 -0.1452 -2.0960 23 1 1.4564 -1.6600 -1.4266 24 1 4.5565 -0.3070 -2.1847 25 1 3.5481 -2.2600 -4.3429 26 1 4.1322 0.8958 0.8987 27 1 4.3045 -0.0188 2.4156 28 1 5.3887 -0.3565 1.0447 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307252665.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -109.938898 kcal Electronic energy + Delta-G solvation = -12294.028753 eV Core-core repulsion = 10116.586433 eV Total energy + Delta-G solvation = -2177.442320 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.87074 -34.91766 -32.25088 -31.65786 -29.74705 -27.80248 -25.37622 -22.70408 -20.21220 -19.27195 -17.06334 -15.66983 -15.04267 -14.77653 -14.08932 -13.51639 -12.74680 -12.54565 -12.14431 -11.78820 -11.65164 -11.32696 -11.24837 -11.07382 -10.85999 -10.44886 -10.38646 -10.07782 -9.90496 -9.06979 -8.78737 -8.45805 -8.11904 -6.23665 -4.30661 3.21530 3.29120 3.33168 4.29555 4.74611 5.04109 5.66892 5.75785 5.90762 5.98338 6.04183 6.17778 6.20648 6.41376 6.46063 6.58685 6.69230 6.86540 7.08027 7.12966 7.39964 7.47918 7.76670 7.87984 8.13642 8.71478 9.35363 9.46995 10.83783 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.045036 B = 0.015495 C = 0.013960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.569636 B = 1806.615040 C = 2005.306799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 H 0.054 0.946 4 C -0.139 4.139 5 C 0.228 3.772 6 O -0.584 6.584 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.894 5.894 11 Si 0.900 3.100 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.084 3.916 16 H 0.088 0.912 17 C -0.146 4.146 18 O -0.384 6.384 19 H 0.060 0.940 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.379 0.621 25 H 0.267 0.733 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 2.389 2.951 4.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.005 3.995 3 H 0.072 0.928 4 C -0.178 4.178 5 C 0.189 3.811 6 O -0.393 6.393 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.132 4.132 10 N -0.534 5.534 11 Si 0.727 3.273 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.027 3.973 16 H 0.106 0.894 17 C -0.203 4.203 18 O -0.304 6.304 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.229 0.771 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.549 2.490 3.593 5.060 hybrid contribution 0.110 -1.037 -1.248 1.626 sum -2.439 1.452 2.346 3.682 Atomic orbital electron populations 1.21723 0.94706 1.02237 1.01012 1.23133 0.93682 0.95151 0.87564 0.92765 1.23531 0.99269 0.99146 0.95839 1.19825 0.84758 0.88590 0.87952 1.86135 1.60263 1.65430 1.27484 1.21652 1.48157 0.94831 0.92639 0.91958 1.25015 0.93820 0.97923 0.96478 1.69735 1.49682 1.32658 1.01298 0.86449 0.78266 0.84468 0.78087 1.20539 1.21074 1.19694 1.22856 0.81437 0.96974 0.96059 0.89367 1.21879 1.00189 0.99935 0.98341 1.88800 1.28538 1.73628 1.39452 0.92133 0.93116 0.91874 0.91234 0.91223 0.77113 0.92360 0.92896 0.94401 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.66 37.16 0.36 -2.02 15 2 C 0.06 1.29 3.92 -25.68 -0.10 1.19 15 3 H 0.05 1.11 8.13 -51.93 -0.42 0.68 15 4 C -0.14 -3.30 4.76 -24.72 -0.12 -3.41 15 5 C 0.23 5.75 0.97 -90.24 -0.09 5.67 15 6 O -0.58 -14.88 11.21 -35.23 -0.39 -15.27 15 7 C -0.53 -14.50 8.15 -34.44 -0.28 -14.78 15 8 H 0.06 1.69 7.38 -52.49 -0.39 1.30 15 9 C 0.07 1.86 5.21 -17.82 -0.09 1.77 15 10 N -0.89 -23.83 10.99 55.43 0.61 -23.22 15 11 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 15 C 0.08 1.94 3.77 -26.16 -0.10 1.84 15 16 H 0.09 2.04 7.41 -51.93 -0.38 1.65 15 17 C -0.15 -3.01 8.56 37.16 0.32 -2.69 15 18 O -0.38 -8.68 10.91 -35.23 -0.38 -9.06 15 19 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.07 1.68 8.02 -51.93 -0.42 1.26 15 23 H 0.07 1.74 7.77 -51.93 -0.40 1.34 15 24 H 0.38 9.82 7.48 45.56 0.34 10.16 15 25 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 26 H 0.05 1.10 7.90 -51.93 -0.41 0.69 15 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.07 1.37 7.85 -51.93 -0.41 0.96 15 LS Contribution 231.78 15.07 3.49 3.49 Total: -1.00 -27.38 231.78 -5.12 -32.50 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.32 Total: 8.29 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.10 Total: -12.44 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.61 Total: -23.22 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.78 Total: -24.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.38 -5.12 -32.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252665.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.441 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds