Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.55526 * 2 1 4 4 C 1.54999 * 110.61540 * 237.12087 * 2 1 3 5 5 C 1.54809 * 102.09101 * 204.32007 * 4 2 1 6 6 O 1.42901 * 110.48674 * 262.20314 * 5 4 2 7 7 C 1.50706 * 110.48896 * 139.69211 * 5 4 2 8 8 H 1.07999 * 119.99639 * 237.57002 * 7 5 4 9 9 C 1.37879 * 120.00109 * 57.56605 * 7 5 4 10 10 N 1.31521 * 119.99690 * 5.30067 * 9 7 5 11 11 Si 1.86791 * 120.00151 * 185.30059 * 9 7 5 12 12 H 1.48500 * 109.47226 * 94.97296 * 11 9 7 13 13 H 1.48494 * 109.47329 * 214.97373 * 11 9 7 14 14 H 1.48509 * 109.47133 * 334.97646 * 11 9 7 15 15 C 1.54097 * 104.30657 * 20.94698 * 5 4 2 16 16 H 1.08998 * 109.87784 * 121.38662 * 15 5 4 17 17 C 1.52999 * 109.88096 * 242.53850 * 15 5 4 18 18 O 1.44033 * 107.14135 * 1.91485 * 15 5 4 19 19 H 1.08998 * 109.47313 * 182.87805 * 1 2 3 20 20 H 1.09005 * 109.46996 * 302.88066 * 1 2 3 21 21 H 1.09000 * 109.47619 * 62.87646 * 1 2 3 22 22 H 1.08999 * 110.90704 * 86.11893 * 4 2 1 23 23 H 1.09002 * 110.90755 * 322.51535 * 4 2 1 24 24 H 0.96696 * 114.00098 * 296.75812 * 6 5 4 25 25 H 0.97002 * 119.99352 * 179.97438 * 10 9 7 26 26 H 1.09003 * 109.46863 * 59.99805 * 17 15 5 27 27 H 1.08995 * 109.47502 * 179.97438 * 17 15 5 28 28 H 1.08997 * 109.47234 * 300.00245 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7876 -1.2184 5 6 3.4810 -1.2122 -0.7269 6 8 4.4763 -0.3137 -1.2211 7 6 3.7861 -2.6238 -1.1575 8 1 4.0269 -3.3737 -0.4185 9 6 3.7578 -2.9580 -2.4949 10 7 3.5676 -2.0248 -3.4020 11 14 3.9894 -4.7361 -3.0184 12 1 2.6616 -5.3775 -3.1935 13 1 4.7341 -4.7810 -4.3024 14 1 4.7567 -5.4633 -1.9754 15 6 3.3899 -1.1245 0.8089 16 1 3.6129 -2.0962 1.2494 17 6 4.3747 -0.0757 1.3294 18 8 2.0416 -0.7348 1.1326 19 1 -0.3634 -1.0263 0.0516 20 1 -0.3633 0.5579 0.8631 21 1 -0.3634 0.4685 -0.9146 22 1 2.1482 -0.1452 -2.0960 23 1 1.4564 -1.6600 -1.4266 24 1 4.5565 -0.3070 -2.1847 25 1 3.5481 -2.2600 -4.3429 26 1 4.1322 0.8958 0.8987 27 1 4.3045 -0.0188 2.4156 28 1 5.3887 -0.3565 1.0447 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307252665.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -128.909477 kcal Electronic energy + Delta-G solvation = -12294.851379 eV Core-core repulsion = 10116.586433 eV Total energy + Delta-G solvation = -2178.264946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.68263 -36.84684 -34.27066 -33.31815 -31.59458 -29.54036 -27.26877 -24.48497 -21.99603 -21.10358 -19.07003 -17.43434 -17.01022 -16.64922 -15.93499 -15.25480 -14.47899 -14.41911 -13.73328 -13.54812 -13.34270 -13.14430 -13.00095 -12.79283 -12.64212 -12.25562 -12.22087 -11.93367 -11.71222 -10.96149 -10.69477 -10.33962 -10.08721 -8.25672 -6.40320 1.38544 1.41146 1.50815 2.36709 2.99055 3.05127 3.90547 4.10990 4.13412 4.27502 4.39197 4.55262 4.65738 4.73651 4.89508 5.00299 5.02249 5.23769 5.31579 5.40940 5.48189 5.53291 5.74276 6.03761 6.19241 6.63839 7.29304 7.40979 8.80230 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.045036 B = 0.015495 C = 0.013960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.569636 B = 1806.615040 C = 2005.306799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 H 0.062 0.938 4 C -0.132 4.132 5 C 0.213 3.787 6 O -0.585 6.585 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.032 3.968 10 N -0.908 5.908 11 Si 0.958 3.042 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.273 1.273 15 C 0.080 3.920 16 H 0.082 0.918 17 C -0.136 4.136 18 O -0.390 6.390 19 H 0.054 0.946 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.374 0.626 25 H 0.270 0.730 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 2.461 3.258 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.170 4.170 5 C 0.174 3.826 6 O -0.393 6.393 7 C -0.601 4.601 8 H 0.071 0.929 9 C -0.169 4.169 10 N -0.547 5.547 11 Si 0.784 3.216 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.197 1.197 15 C 0.023 3.977 16 H 0.100 0.900 17 C -0.193 4.193 18 O -0.310 6.310 19 H 0.073 0.927 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.223 0.777 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.051 2.571 3.908 5.585 hybrid contribution 0.272 -1.044 -1.355 1.732 sum -2.779 1.526 2.552 4.070 Atomic orbital electron populations 1.21717 0.91637 1.02616 1.03113 1.23265 0.96110 0.94615 0.85413 0.92032 1.23342 0.98427 0.98499 0.96779 1.20021 0.85240 0.87833 0.89514 1.86125 1.60692 1.65508 1.27014 1.21897 1.49335 0.95824 0.93084 0.92932 1.25673 0.93383 1.01490 0.96382 1.69803 1.49375 1.33998 1.01511 0.85538 0.78241 0.80123 0.77704 1.20102 1.20377 1.19720 1.22840 0.82466 0.97722 0.94683 0.89975 1.21775 0.98959 0.98704 0.99910 1.88786 1.28255 1.73970 1.39993 0.92653 0.90824 0.89970 0.92285 0.93251 0.77722 0.92072 0.93215 0.91798 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.66 71.98 0.70 -3.54 15 2 C 0.06 2.53 3.92 31.28 0.12 2.65 15 3 H 0.06 2.39 8.13 -2.39 -0.02 2.37 15 4 C -0.13 -6.22 4.76 31.90 0.15 -6.07 15 5 C 0.21 10.77 0.97 -10.55 -0.01 10.76 15 6 O -0.59 -29.89 11.21 -148.98 -1.67 -31.56 15 7 C -0.56 -30.78 8.15 25.60 0.21 -30.57 15 8 H 0.05 2.89 7.38 -2.91 -0.02 2.87 15 9 C 0.03 1.68 5.21 84.65 0.44 2.13 15 10 N -0.91 -48.30 10.99 21.45 0.24 -48.06 15 11 Si 0.96 42.29 29.54 68.60 2.03 44.32 15 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 15 C 0.08 3.66 3.77 30.96 0.12 3.78 15 16 H 0.08 3.79 7.41 -2.39 -0.02 3.77 15 17 C -0.14 -5.41 8.56 71.98 0.62 -4.79 15 18 O -0.39 -17.06 10.91 -148.98 -1.63 -18.69 15 19 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.06 2.85 8.02 -2.39 -0.02 2.83 15 23 H 0.05 2.48 7.77 -2.39 -0.02 2.46 15 24 H 0.37 19.58 7.48 -74.06 -0.55 19.03 15 25 H 0.27 13.63 8.31 -92.71 -0.77 12.86 15 26 H 0.05 1.98 7.90 -2.39 -0.02 1.96 15 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.06 2.44 7.85 -2.39 -0.02 2.42 15 Total: -1.00 -56.46 231.78 1.89 -54.56 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.58 Total: 25.09 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 2.34 Total: -25.66 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.24 Total: -48.06 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -3.29 Total: -50.25 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -56.46 1.89 -54.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252665.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.346 kcal (2) G-P(sol) polarization free energy of solvation -56.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds