Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.33411 * 2 1 4 4 C 1.54486 * 110.46271 * 237.68862 * 2 1 3 5 5 C 1.54510 * 104.06135 * 217.14038 * 4 2 1 6 6 O 1.42903 * 110.51017 * 118.64396 * 5 4 2 7 7 C 1.50697 * 110.51241 * 241.35617 * 5 4 2 8 8 H 1.08003 * 119.99772 * 114.64505 * 7 5 4 9 9 C 1.37873 * 120.00165 * 294.64324 * 7 5 4 10 10 N 1.31519 * 119.99699 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00264 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47014 * 90.00158 * 11 9 7 13 13 H 1.48505 * 109.47146 * 209.99728 * 11 9 7 14 14 H 1.48497 * 109.47177 * 330.00031 * 11 9 7 15 15 C 1.54487 * 104.06095 * 0.02562 * 5 4 2 16 16 H 1.08993 * 110.37257 * 265.14520 * 15 5 4 17 17 C 1.53003 * 110.37091 * 142.92187 * 15 5 4 18 18 O 1.44419 * 104.80357 * 23.97821 * 15 5 4 19 19 H 1.09003 * 109.46417 * 299.20331 * 1 2 3 20 20 H 1.09000 * 109.47243 * 59.19744 * 1 2 3 21 21 H 1.08999 * 109.47299 * 179.20385 * 1 2 3 22 22 H 1.09004 * 110.51003 * 98.49789 * 4 2 1 23 23 H 1.08993 * 110.50905 * 335.78558 * 4 2 1 24 24 H 0.96696 * 113.99831 * 65.35952 * 6 5 4 25 25 H 0.97006 * 120.00073 * 180.02562 * 10 9 7 26 26 H 1.09000 * 109.47290 * 59.99456 * 17 15 5 27 27 H 1.08999 * 109.47135 * 180.02562 * 17 15 5 28 28 H 1.09005 * 109.46738 * 299.99973 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2233 5 6 3.3207 -1.5032 -0.6838 6 8 3.1627 -2.9189 -0.7979 7 6 4.5555 -1.0475 -1.4177 8 1 5.3284 -0.5075 -0.8909 9 6 4.6987 -1.3200 -2.7616 10 7 3.7573 -1.9772 -3.4032 11 14 6.2289 -0.7546 -3.6716 12 1 7.2671 -1.8140 -3.6001 13 1 5.8899 -0.4888 -5.0928 14 1 6.7463 0.4885 -3.0452 15 6 3.3879 -1.0845 0.8017 16 1 4.0514 -0.2287 0.9251 17 6 3.8643 -2.2552 1.6640 18 8 2.0324 -0.7233 1.1450 19 1 -0.3632 0.5014 0.8971 20 1 -0.3634 0.5262 -0.8827 21 1 -0.3634 -1.0275 -0.0143 22 1 2.3450 -0.0833 -2.0208 23 1 1.3313 -1.4927 -1.5769 24 1 3.1145 -3.2370 -1.7097 25 1 3.8581 -2.1693 -4.3487 26 1 4.8565 -2.5668 1.3375 27 1 3.9059 -1.9442 2.7079 28 1 3.1695 -3.0887 1.5609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307252666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = -129.240084 kcal Electronic energy + Delta-G solvation = -12270.766675 eV Core-core repulsion = 10092.487393 eV Total energy + Delta-G solvation = -2178.279282 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60304 -36.85202 -34.21358 -33.43266 -31.73332 -29.51603 -27.15798 -24.20782 -22.07722 -21.32734 -19.19344 -17.23431 -16.99077 -16.28489 -16.13715 -15.25228 -15.00529 -14.27863 -13.78828 -13.43559 -13.26535 -13.07709 -12.89693 -12.74898 -12.69584 -12.36990 -12.24371 -11.68588 -11.64863 -11.09182 -10.69890 -10.41281 -10.09318 -8.24848 -6.41180 1.40145 1.42343 1.51647 2.36782 2.98153 3.08469 3.94157 4.07663 4.15833 4.26414 4.36979 4.53859 4.70721 4.83755 4.84445 4.96153 5.07673 5.23066 5.26625 5.38923 5.48723 5.54747 5.67629 5.90834 6.28379 6.64493 7.30584 7.45159 8.81107 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046426 B = 0.015300 C = 0.013634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.959538 B = 1829.637906 C = 2053.129281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.062 3.938 3 H 0.066 0.934 4 C -0.140 4.140 5 C 0.214 3.786 6 O -0.589 6.589 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.029 3.971 10 N -0.913 5.913 11 Si 0.962 3.038 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.269 1.269 15 C 0.078 3.922 16 H 0.067 0.933 17 C -0.116 4.116 18 O -0.392 6.392 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.374 0.626 25 H 0.271 0.729 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 3.143 3.322 5.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.084 0.916 4 C -0.178 4.178 5 C 0.174 3.826 6 O -0.398 6.398 7 C -0.598 4.598 8 H 0.076 0.924 9 C -0.172 4.172 10 N -0.553 5.553 11 Si 0.787 3.213 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.194 1.194 15 C 0.020 3.980 16 H 0.085 0.915 17 C -0.174 4.174 18 O -0.312 6.312 19 H 0.092 0.908 20 H 0.101 0.899 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.225 0.775 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.252 3.065 4.003 5.522 hybrid contribution 0.860 0.156 -1.608 1.830 sum -1.392 3.221 2.395 4.248 Atomic orbital electron populations 1.21736 0.91684 1.02418 1.03148 1.23108 0.96312 0.94896 0.85177 0.91608 1.23320 0.98231 0.99189 0.97105 1.20087 0.92097 0.79190 0.91189 1.86103 1.96316 1.24312 1.33045 1.21873 1.05315 1.37458 0.95129 0.92372 1.25714 0.99200 0.94313 0.97932 1.69707 1.34237 1.40601 1.10732 0.85499 0.79442 0.78755 0.77589 1.20175 1.20541 1.19378 1.23057 0.83335 0.97078 0.94497 0.91534 1.21380 1.00948 0.96771 0.98254 1.88975 1.28067 1.75092 1.39109 0.90826 0.89874 0.92957 0.92635 0.93530 0.77543 0.91999 0.91798 0.91464 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.53 71.98 0.69 -3.55 15 2 C 0.06 2.51 3.92 31.10 0.12 2.63 15 3 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 4 C -0.14 -6.64 5.35 31.61 0.17 -6.47 15 5 C 0.21 10.91 0.92 -10.52 -0.01 10.90 15 6 O -0.59 -31.51 11.43 -148.98 -1.70 -33.21 15 7 C -0.56 -30.04 8.07 25.60 0.21 -29.83 15 8 H 0.06 3.08 7.57 -2.91 -0.02 3.06 15 9 C 0.03 1.51 5.11 84.65 0.43 1.94 15 10 N -0.91 -48.87 10.93 21.45 0.23 -48.64 15 11 Si 0.96 41.73 29.54 68.60 2.03 43.75 15 12 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 15 C 0.08 3.53 3.43 31.10 0.11 3.64 15 16 H 0.07 2.96 7.70 -2.39 -0.02 2.94 15 17 C -0.12 -4.75 8.98 71.98 0.65 -4.10 15 18 O -0.39 -17.26 11.04 -148.98 -1.64 -18.90 15 19 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.05 1.73 8.13 -2.39 -0.02 1.71 15 22 H 0.05 2.78 7.55 -2.39 -0.02 2.76 15 23 H 0.05 2.27 7.72 -2.39 -0.02 2.25 15 24 H 0.37 20.59 7.02 -74.06 -0.52 20.07 15 25 H 0.27 13.74 8.31 -92.70 -0.77 12.97 15 26 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 28 H 0.05 2.20 7.49 -2.38 -0.02 2.19 15 Total: -1.00 -57.13 231.75 1.89 -55.24 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.62 Total: 26.60 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 2.36 Total: -24.84 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.23 Total: -48.64 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -3.35 Total: -52.11 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -57.13 1.89 -55.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.996 kcal (2) G-P(sol) polarization free energy of solvation -57.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds