Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.67741 * 2 1 4 4 C 1.54998 * 110.61671 * 237.03059 * 2 1 3 5 5 C 1.54801 * 102.09461 * 204.47662 * 4 2 1 6 6 O 1.42904 * 110.49003 * 262.07419 * 5 4 2 7 7 C 1.50699 * 110.48881 * 139.55672 * 5 4 2 8 8 H 1.08002 * 120.00516 * 241.45183 * 7 5 4 9 9 C 1.37884 * 119.99783 * 61.45483 * 7 5 4 10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 5 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 C 1.54103 * 104.18690 * 20.88223 * 5 4 2 16 16 H 1.08996 * 109.88409 * 242.60372 * 15 5 4 17 17 C 1.53007 * 109.87992 * 121.45469 * 15 5 4 18 18 O 1.43746 * 107.29537 * 2.03052 * 15 5 4 19 19 H 1.09001 * 109.47515 * 182.96884 * 1 2 3 20 20 H 1.09008 * 109.46996 * 302.96697 * 1 2 3 21 21 H 1.09001 * 109.47129 * 62.96402 * 1 2 3 22 22 H 1.08997 * 110.90278 * 86.27523 * 4 2 1 23 23 H 1.08999 * 110.90649 * 322.67935 * 4 2 1 24 24 H 0.96691 * 113.99980 * 296.75237 * 6 5 4 25 25 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.46835 * 59.99543 * 17 15 5 27 27 H 1.08992 * 109.47252 * 179.97438 * 17 15 5 28 28 H 1.09006 * 109.46528 * 300.00322 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0758 -0.7895 -1.2171 5 6 3.4794 -1.2168 -0.7235 6 8 4.4777 -0.3225 -1.2193 7 6 3.7807 -2.6305 -1.1500 8 1 3.9571 -3.3931 -0.4060 9 6 3.8312 -2.9502 -2.4903 10 7 3.6170 -2.0214 -3.3964 11 14 4.1971 -4.7040 -3.0190 12 1 5.6630 -4.8760 -3.1833 13 1 3.7011 -5.6467 -1.9842 14 1 3.5182 -4.9839 -4.3097 15 6 3.3839 -1.1255 0.8118 16 1 4.0853 -0.3784 1.1831 17 6 3.6934 -2.4884 1.4344 18 8 2.0384 -0.7353 1.1338 19 1 -0.3634 -1.0263 0.0532 20 1 -0.3633 0.5593 0.8623 21 1 -0.3633 0.4671 -0.9154 22 1 2.1508 -0.1478 -2.0949 23 1 1.4548 -1.6607 -1.4258 24 1 4.5587 -0.3187 -2.1828 25 1 3.6529 -2.2463 -4.3394 26 1 4.7011 -2.7953 1.1543 27 1 3.6245 -2.4162 2.5197 28 1 2.9756 -3.2246 1.0724 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307252667.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -122.189289 kcal Electronic energy + Delta-G solvation = -12315.771897 eV Core-core repulsion = 10137.798360 eV Total energy + Delta-G solvation = -2177.973537 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.69054 -36.90126 -34.21382 -33.62737 -32.01096 -29.07883 -27.10376 -24.48672 -22.08496 -21.42386 -18.69465 -17.47452 -17.02331 -16.54986 -16.04514 -15.61389 -14.63785 -14.23102 -13.98888 -13.49237 -13.25859 -13.05605 -12.80345 -12.72446 -12.70926 -12.27114 -12.11285 -11.73698 -11.65889 -10.99539 -10.71477 -10.33323 -10.07489 -8.21036 -6.33766 1.41315 1.43679 1.52591 2.39603 3.00711 3.04286 3.82606 4.10711 4.14326 4.29932 4.43841 4.53302 4.70760 4.76204 4.89240 4.98524 5.03344 5.26523 5.31764 5.42424 5.43621 5.52191 5.77673 6.07592 6.18536 6.71085 7.32703 7.41265 8.85930 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044593 B = 0.015864 C = 0.014595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.757414 B = 1764.562264 C = 1918.014323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.061 3.939 3 H 0.060 0.940 4 C -0.132 4.132 5 C 0.207 3.793 6 O -0.598 6.598 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.025 3.975 10 N -0.916 5.916 11 Si 0.958 3.042 12 H -0.277 1.277 13 H -0.268 1.268 14 H -0.284 1.284 15 C 0.082 3.918 16 H 0.051 0.949 17 C -0.120 4.120 18 O -0.388 6.388 19 H 0.056 0.944 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.378 0.622 25 H 0.267 0.733 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 0.781 3.656 4.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.003 3.997 3 H 0.078 0.922 4 C -0.171 4.171 5 C 0.168 3.832 6 O -0.407 6.407 7 C -0.597 4.597 8 H 0.100 0.900 9 C -0.175 4.175 10 N -0.556 5.556 11 Si 0.784 3.216 12 H -0.203 1.203 13 H -0.193 1.193 14 H -0.209 1.209 15 C 0.024 3.976 16 H 0.068 0.932 17 C -0.177 4.177 18 O -0.309 6.309 19 H 0.075 0.925 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.227 0.773 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.315 0.879 4.308 5.507 hybrid contribution 0.367 -0.764 -1.471 1.697 sum -2.949 0.115 2.837 4.093 Atomic orbital electron populations 1.21705 0.91417 1.02698 1.03089 1.23301 0.96332 0.94524 0.85498 0.92219 1.23359 0.98566 0.98518 0.96619 1.20183 0.85035 0.88483 0.89519 1.86079 1.60892 1.66152 1.27571 1.22308 1.48964 0.95507 0.92954 0.90035 1.25764 0.93826 1.01191 0.96700 1.69809 1.49835 1.34612 1.01374 0.85546 0.78201 0.80252 0.77587 1.20262 1.19260 1.20948 1.22581 0.83384 0.96880 0.94713 0.93152 1.21752 1.01861 0.94936 0.99103 1.88731 1.28476 1.73899 1.39779 0.92497 0.90844 0.89998 0.92535 0.92908 0.77259 0.92364 0.91326 0.91958 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.65 71.98 0.69 -3.48 15 2 C 0.06 2.45 3.98 31.28 0.12 2.57 15 3 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 4 C -0.13 -6.26 4.86 31.89 0.15 -6.10 15 5 C 0.21 10.51 1.00 -10.55 -0.01 10.50 15 6 O -0.60 -31.75 12.96 -148.98 -1.93 -33.68 15 7 C -0.56 -29.62 7.27 25.60 0.19 -29.44 15 8 H 0.08 4.17 4.73 -2.91 -0.01 4.16 15 9 C 0.03 1.32 5.26 84.66 0.44 1.76 15 10 N -0.92 -49.02 10.96 21.45 0.24 -48.78 15 11 Si 0.96 41.89 29.54 68.60 2.03 43.91 15 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 15 C 0.08 3.75 3.88 30.97 0.12 3.87 15 16 H 0.05 2.31 7.97 -2.39 -0.02 2.29 15 17 C -0.12 -4.84 8.06 71.98 0.58 -4.26 15 18 O -0.39 -17.04 10.89 -148.98 -1.62 -18.67 15 19 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.06 2.76 8.04 -2.39 -0.02 2.75 15 23 H 0.05 2.64 7.78 -2.39 -0.02 2.62 15 24 H 0.38 20.31 7.35 -74.06 -0.54 19.77 15 25 H 0.27 13.65 8.31 -92.70 -0.77 12.88 15 26 H 0.07 2.77 7.22 -2.39 -0.02 2.75 15 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 28 H 0.06 2.44 7.02 -2.38 -0.02 2.43 15 Total: -1.00 -56.72 228.77 1.61 -55.11 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.60 Total: 26.68 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.29 Total: -24.58 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.24 Total: -48.78 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -3.55 Total: -52.35 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -56.72 1.61 -55.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252667.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.075 kcal (2) G-P(sol) polarization free energy of solvation -56.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds