Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.35438 * 2 1 4 4 C 1.54946 * 110.30478 * 237.86048 * 2 1 3 5 5 C 1.55305 * 100.94231 * 204.63798 * 4 2 1 6 6 O 1.42897 * 110.84927 * 152.31981 * 5 4 2 7 7 C 1.50703 * 110.84811 * 275.94519 * 5 4 2 8 8 H 1.07998 * 120.00347 * 24.88933 * 7 5 4 9 9 C 1.37875 * 119.99682 * 204.89594 * 7 5 4 10 10 N 1.31518 * 120.00283 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99971 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46982 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47182 * 119.99978 * 11 9 7 14 14 H 1.48499 * 109.47473 * 239.99915 * 11 9 7 15 15 C 1.54385 * 102.25141 * 34.13163 * 5 4 2 16 16 H 1.08997 * 109.83028 * 98.15561 * 15 5 4 17 17 C 1.53002 * 109.90403 * 219.08858 * 15 5 4 18 18 O 1.43236 * 107.58900 * 338.64563 * 15 5 4 19 19 H 1.09013 * 109.46600 * 299.30953 * 1 2 3 20 20 H 1.08998 * 109.47517 * 59.30089 * 1 2 3 21 21 H 1.09001 * 109.47628 * 179.31127 * 1 2 3 22 22 H 1.08996 * 111.12726 * 322.55420 * 4 2 1 23 23 H 1.08999 * 111.12798 * 86.68009 * 4 2 1 24 24 H 0.96701 * 113.99754 * 67.17059 * 6 5 4 25 25 H 0.97001 * 120.00172 * 180.02562 * 10 9 7 26 26 H 1.08999 * 109.46738 * 183.30903 * 17 15 5 27 27 H 1.09002 * 109.47084 * 303.30848 * 17 15 5 28 28 H 1.08991 * 109.47182 * 63.31334 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0677 -0.7731 -1.2305 5 6 3.4698 -1.2025 -0.7192 6 8 3.8980 -2.4061 -1.3595 7 6 4.4756 -0.0986 -0.9211 8 1 4.1461 0.9282 -0.9793 9 6 5.8166 -0.3996 -1.0316 10 7 6.2180 -1.6500 -0.9604 11 14 7.0633 0.9687 -1.2826 12 1 6.3607 2.2762 -1.3287 13 1 8.0334 0.9668 -0.1583 14 1 7.7869 0.7508 -2.5610 15 6 3.2112 -1.4420 0.7839 16 1 3.0624 -2.5058 0.9686 17 6 4.3987 -0.9341 1.6041 18 8 2.0286 -0.7168 1.1406 19 1 -0.3633 0.5031 0.8962 20 1 -0.3634 0.5246 -0.8836 21 1 -0.3634 -1.0276 -0.0124 22 1 1.4470 -1.6415 -1.4508 23 1 2.1488 -0.1205 -2.0998 24 1 4.0734 -2.3074 -2.3054 25 1 7.1615 -1.8617 -1.0377 26 1 4.2352 -1.1593 2.6580 27 1 5.3111 -1.4248 1.2649 28 1 4.4958 0.1437 1.4739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307252668.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -97.463755 kcal Electronic energy + Delta-G solvation = -12377.914277 eV Core-core repulsion = 10201.012920 eV Total energy + Delta-G solvation = -2176.901357 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.83579 -34.95591 -32.28972 -31.61375 -29.82229 -27.55519 -25.08945 -22.69346 -20.27312 -19.20356 -17.32976 -15.30371 -14.97309 -14.72357 -13.99316 -13.40452 -13.14635 -12.31185 -12.13087 -11.98632 -11.72447 -11.18108 -11.10401 -10.81157 -10.64755 -10.50586 -10.18394 -9.97318 -9.90053 -8.77979 -8.66763 -8.49432 -8.11600 -5.99037 -4.19210 3.22537 3.32356 3.35463 4.33826 4.73897 5.16406 5.49967 5.73565 5.79045 5.92404 6.09454 6.19977 6.38643 6.53984 6.63351 6.71161 6.76476 6.91143 6.98384 7.27815 7.48389 7.67875 7.80288 8.02475 8.20210 8.75466 9.34779 9.55180 10.96060 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049752 B = 0.015457 C = 0.015067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.650893 B = 1811.000705 C = 1857.934757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.084 3.916 3 H 0.062 0.938 4 C -0.183 4.183 5 C 0.233 3.767 6 O -0.536 6.536 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.079 3.921 10 N -0.847 5.847 11 Si 0.882 3.118 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.093 3.907 16 H 0.056 0.944 17 C -0.130 4.130 18 O -0.389 6.389 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.360 0.640 25 H 0.258 0.742 26 H 0.019 0.981 27 H 0.083 0.917 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 2.084 -0.299 5.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.026 3.974 3 H 0.080 0.920 4 C -0.221 4.221 5 C 0.192 3.808 6 O -0.339 6.339 7 C -0.589 4.589 8 H 0.078 0.922 9 C -0.127 4.127 10 N -0.482 5.482 11 Si 0.709 3.291 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.035 3.965 16 H 0.074 0.926 17 C -0.187 4.187 18 O -0.310 6.310 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.204 0.796 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.157 1.709 0.514 5.457 hybrid contribution 0.907 1.038 -0.896 1.644 sum -4.250 2.747 -0.381 5.075 Atomic orbital electron populations 1.21894 0.95494 1.01870 1.01187 1.22591 0.92737 0.95765 0.86293 0.91972 1.24002 1.00642 0.99568 0.97908 1.20117 0.88188 0.84389 0.88086 1.86302 1.89453 1.32961 1.25136 1.21376 0.91459 0.93090 1.52962 0.92201 1.25018 0.98178 0.95249 0.94263 1.70208 1.15077 1.16365 1.46574 0.86707 0.81735 0.82751 0.77896 1.19741 1.20773 1.20916 1.22574 0.83886 0.93503 0.96511 0.92579 1.21859 0.98917 1.02375 0.95533 1.88294 1.43373 1.65147 1.34170 0.92770 0.92093 0.92584 0.92300 0.91183 0.79579 0.93202 0.96226 0.89849 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.62 37.16 0.36 -2.01 15 2 C 0.08 1.70 3.91 -25.71 -0.10 1.60 15 3 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 4 C -0.18 -3.88 5.79 -24.48 -0.14 -4.02 15 5 C 0.23 5.77 1.05 -89.82 -0.09 5.68 15 6 O -0.54 -13.72 11.01 -35.23 -0.39 -14.10 15 7 C -0.55 -14.39 6.24 -34.44 -0.21 -14.61 15 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 15 9 C 0.08 2.07 4.39 -17.82 -0.08 1.99 15 10 N -0.85 -23.07 10.63 55.43 0.59 -22.48 15 11 Si 0.88 20.38 29.54 -169.99 -5.02 15.36 15 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 15 C 0.09 2.28 3.86 -26.00 -0.10 2.18 15 16 H 0.06 1.42 8.05 -51.93 -0.42 1.00 15 17 C -0.13 -3.14 8.36 37.16 0.31 -2.83 15 18 O -0.39 -9.02 10.70 -35.23 -0.38 -9.40 15 19 H 0.05 0.81 8.14 -51.92 -0.42 0.39 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 22 H 0.06 1.19 8.06 -51.93 -0.42 0.77 15 23 H 0.07 1.42 8.03 -51.93 -0.42 1.00 15 24 H 0.36 8.55 9.05 45.56 0.41 8.96 15 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 27 H 0.08 2.18 6.35 -51.93 -0.33 1.85 15 28 H 0.06 1.42 7.19 -51.93 -0.37 1.05 15 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -27.98 229.97 -5.00 -32.98 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.20 Total: 6.20 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.06 Total: -12.03 kcal Atomic # 7 Polarization: -23.07 SS G_CDS: 0.59 Total: -22.48 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.76 Total: -23.50 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.98 -5.00 -32.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252668.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.487 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds