Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.35438 * 2 1 4 4 C 1.54946 * 110.30478 * 237.86048 * 2 1 3 5 5 C 1.55305 * 100.94231 * 204.63798 * 4 2 1 6 6 O 1.42897 * 110.84927 * 152.31981 * 5 4 2 7 7 C 1.50703 * 110.84811 * 275.94519 * 5 4 2 8 8 H 1.07998 * 120.00347 * 24.88933 * 7 5 4 9 9 C 1.37875 * 119.99682 * 204.89594 * 7 5 4 10 10 N 1.31518 * 120.00283 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99971 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46982 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47182 * 119.99978 * 11 9 7 14 14 H 1.48499 * 109.47473 * 239.99915 * 11 9 7 15 15 C 1.54385 * 102.25141 * 34.13163 * 5 4 2 16 16 H 1.08997 * 109.83028 * 98.15561 * 15 5 4 17 17 C 1.53002 * 109.90403 * 219.08858 * 15 5 4 18 18 O 1.43236 * 107.58900 * 338.64563 * 15 5 4 19 19 H 1.09013 * 109.46600 * 299.30953 * 1 2 3 20 20 H 1.08998 * 109.47517 * 59.30089 * 1 2 3 21 21 H 1.09001 * 109.47628 * 179.31127 * 1 2 3 22 22 H 1.08996 * 111.12726 * 322.55420 * 4 2 1 23 23 H 1.08999 * 111.12798 * 86.68009 * 4 2 1 24 24 H 0.96701 * 113.99754 * 67.17059 * 6 5 4 25 25 H 0.97001 * 120.00172 * 180.02562 * 10 9 7 26 26 H 1.08999 * 109.46738 * 183.30903 * 17 15 5 27 27 H 1.09002 * 109.47084 * 303.30848 * 17 15 5 28 28 H 1.08991 * 109.47182 * 63.31334 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0677 -0.7731 -1.2305 5 6 3.4698 -1.2025 -0.7192 6 8 3.8980 -2.4061 -1.3595 7 6 4.4756 -0.0986 -0.9211 8 1 4.1461 0.9282 -0.9793 9 6 5.8166 -0.3996 -1.0316 10 7 6.2180 -1.6500 -0.9604 11 14 7.0633 0.9687 -1.2826 12 1 6.3607 2.2762 -1.3287 13 1 8.0334 0.9668 -0.1583 14 1 7.7869 0.7508 -2.5610 15 6 3.2112 -1.4420 0.7839 16 1 3.0624 -2.5058 0.9686 17 6 4.3987 -0.9341 1.6041 18 8 2.0286 -0.7168 1.1406 19 1 -0.3633 0.5031 0.8962 20 1 -0.3634 0.5246 -0.8836 21 1 -0.3634 -1.0276 -0.0124 22 1 1.4470 -1.6415 -1.4508 23 1 2.1488 -0.1205 -2.0998 24 1 4.0734 -2.3074 -2.3054 25 1 7.1615 -1.8617 -1.0377 26 1 4.2352 -1.1593 2.6580 27 1 5.3111 -1.4248 1.2649 28 1 4.4958 0.1437 1.4739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307252668.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -117.254041 kcal Electronic energy + Delta-G solvation = -12378.772449 eV Core-core repulsion = 10201.012920 eV Total energy + Delta-G solvation = -2177.759529 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64162 -36.86522 -34.25478 -33.30293 -31.72997 -29.23088 -27.04504 -24.47248 -21.98903 -21.07267 -19.27909 -17.06399 -16.84123 -16.68530 -15.83839 -15.19315 -14.96167 -14.10234 -13.84591 -13.51011 -13.38845 -13.04581 -12.85460 -12.59634 -12.47215 -12.32147 -12.07435 -11.80764 -11.66991 -10.69905 -10.63091 -10.34446 -10.03230 -7.99425 -6.24809 1.39086 1.44411 1.52445 2.41333 3.01080 3.18166 3.77136 4.09315 4.15137 4.37209 4.56287 4.63533 4.76096 4.82538 4.90523 5.00921 5.07623 5.21060 5.34992 5.41986 5.55679 5.68206 5.76607 6.08044 6.34620 6.74494 7.35993 7.58597 8.95174 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049752 B = 0.015457 C = 0.015067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.650893 B = 1811.000705 C = 1857.934757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 H 0.057 0.943 4 C -0.173 4.173 5 C 0.217 3.783 6 O -0.549 6.549 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.042 3.958 10 N -0.872 5.872 11 Si 0.938 3.062 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.090 3.910 16 H 0.044 0.956 17 C -0.120 4.120 18 O -0.397 6.397 19 H 0.065 0.935 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.363 0.637 25 H 0.257 0.743 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 2.961 -0.507 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.019 3.981 3 H 0.075 0.925 4 C -0.211 4.211 5 C 0.177 3.823 6 O -0.353 6.353 7 C -0.596 4.596 8 H 0.072 0.928 9 C -0.162 4.162 10 N -0.508 5.508 11 Si 0.764 3.236 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.205 1.205 15 C 0.032 3.968 16 H 0.062 0.938 17 C -0.178 4.178 18 O -0.318 6.318 19 H 0.084 0.916 20 H 0.106 0.894 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.209 0.791 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.986 2.595 0.301 6.531 hybrid contribution 1.135 0.766 -0.821 1.597 sum -4.851 3.362 -0.519 5.924 Atomic orbital electron populations 1.21854 0.91863 1.02696 1.03144 1.22853 0.95548 0.94860 0.84825 0.92503 1.23891 0.98555 1.00131 0.98571 1.20288 0.89788 0.83852 0.88407 1.86276 1.89795 1.33627 1.25587 1.21515 0.92123 0.93111 1.52843 0.92826 1.25569 0.99589 0.96918 0.94081 1.70311 1.15271 1.17854 1.47344 0.85829 0.79611 0.80445 0.77699 1.19524 1.20936 1.20463 1.22493 0.84549 0.93080 0.96657 0.93803 1.21718 0.97999 1.01369 0.96691 1.88274 1.42692 1.65256 1.35561 0.91575 0.89416 0.92337 0.91383 0.90343 0.79130 0.93308 0.94295 0.92062 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.62 71.98 0.69 -3.31 15 2 C 0.08 2.94 3.91 31.26 0.12 3.06 15 3 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 4 C -0.17 -7.06 5.79 32.05 0.19 -6.88 15 5 C 0.22 10.64 1.05 -10.28 -0.01 10.63 15 6 O -0.55 -28.12 11.01 -148.98 -1.64 -29.76 15 7 C -0.56 -28.87 6.24 25.60 0.16 -28.71 15 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 15 9 C 0.04 2.19 4.39 84.65 0.37 2.56 15 10 N -0.87 -47.55 10.63 21.45 0.23 -47.32 15 11 Si 0.94 41.53 29.54 68.60 2.03 43.55 15 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 15 C 0.09 4.40 3.86 31.07 0.12 4.52 15 16 H 0.04 2.22 8.05 -2.39 -0.02 2.20 15 17 C -0.12 -5.81 8.36 71.98 0.60 -5.21 15 18 O -0.40 -17.87 10.70 -148.98 -1.59 -19.46 15 19 H 0.07 1.76 8.14 -2.38 -0.02 1.74 15 20 H 0.09 2.07 8.14 -2.39 -0.02 2.06 15 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.07 2.62 8.06 -2.39 -0.02 2.60 15 23 H 0.08 3.03 8.03 -2.39 -0.02 3.01 15 24 H 0.36 17.33 9.05 -74.06 -0.67 16.66 15 25 H 0.26 13.50 8.31 -92.71 -0.77 12.73 15 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 27 H 0.06 3.22 6.35 -2.39 -0.02 3.21 15 28 H 0.05 2.42 7.19 -2.39 -0.02 2.40 15 Total: -1.00 -57.49 229.97 1.73 -55.76 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.47 Total: 20.56 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 2.24 Total: -23.33 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.23 Total: -47.32 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -3.23 Total: -49.22 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -57.49 1.73 -55.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252668.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.496 kcal (2) G-P(sol) polarization free energy of solvation -57.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds