Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48497 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47087 * 300.00491 * 3 2 1 6 6 H 1.48496 * 109.47071 * 60.00204 * 3 2 1 7 7 C 1.37870 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00380 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.33128 * 57.75038 * 9 7 2 11 11 O 1.44423 * 110.46492 * 295.43891 * 9 7 2 12 12 C 1.44427 * 105.27626 * 200.60596 * 11 9 7 13 13 H 1.09002 * 110.46660 * 281.63854 * 12 11 9 14 14 C 1.52999 * 110.37346 * 159.33911 * 12 11 9 15 15 O 1.42905 * 109.46728 * 69.62448 * 14 12 11 16 16 C 1.54482 * 104.80046 * 40.51001 * 12 11 9 17 17 H 1.09001 * 118.05003 * 117.97463 * 16 12 11 18 18 O 1.42891 * 118.02464 * 275.89340 * 16 12 11 19 19 C 1.42895 * 65.45723 * 89.15298 * 18 16 12 20 20 H 1.08993 * 120.06504 * 111.98014 * 19 18 16 21 21 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47486 * 309.62386 * 14 12 11 23 23 H 1.09001 * 109.47362 * 189.61664 * 14 12 11 24 24 H 0.96696 * 114.00036 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5890 -2.5542 -0.8647 11 8 0.4957 -2.6461 1.2216 12 6 0.2388 -4.0623 1.3422 13 1 -0.5788 -4.3586 0.6851 14 6 -0.0875 -4.4228 2.7929 15 8 -1.3633 -3.8822 3.1425 16 6 1.5551 -4.7409 0.9025 17 1 2.0847 -5.3533 1.6323 18 8 1.7703 -4.9462 -0.4951 19 6 2.2363 -3.6889 -0.0012 20 1 3.3052 -3.4792 0.0361 21 1 -0.4850 0.8400 0.0004 22 1 0.6758 -4.0076 3.4510 23 1 -0.1103 -5.5071 2.9015 24 1 -1.6357 -4.0726 4.0506 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307422721.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -87.109842 kcal Electronic energy + Delta-G solvation = -11604.916737 eV Core-core repulsion = 9292.631264 eV Total energy + Delta-G solvation = -2312.285473 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.51359 -36.67955 -35.37933 -32.67932 -29.71531 -28.02013 -25.14194 -23.13664 -20.90713 -20.27004 -17.13352 -17.06182 -15.54668 -15.23595 -14.84733 -14.38640 -13.98646 -13.45969 -13.27552 -12.48473 -12.28730 -11.49866 -11.02161 -10.89152 -10.68251 -10.20007 -9.87209 -9.71611 -9.39196 -9.16715 -8.65622 -8.09210 -6.10067 -4.25282 3.27652 3.34914 3.38491 3.84647 4.24827 4.35416 4.82389 4.93392 5.22902 5.35774 5.43981 5.68400 5.73677 5.78714 6.21311 6.24618 6.36739 6.55650 7.31438 7.79218 7.96489 8.00880 8.31460 8.82803 9.45705 10.98161 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.044166 B = 0.014012 C = 0.011439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.813960 B = 1997.783031 C = 2447.230298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.070 0.930 9 C 0.217 3.783 10 H 0.040 0.960 11 O -0.330 6.330 12 C 0.079 3.921 13 H 0.065 0.935 14 C 0.093 3.907 15 O -0.559 6.559 16 C -0.076 4.076 17 H 0.136 0.864 18 O -0.348 6.348 19 C -0.021 4.021 20 H 0.139 0.861 21 H 0.264 0.736 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -6.496 5.294 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.161 3.839 10 H 0.058 0.942 11 O -0.249 6.249 12 C 0.020 3.980 13 H 0.083 0.917 14 C 0.015 3.985 15 O -0.363 6.363 16 C -0.133 4.133 17 H 0.153 0.847 18 O -0.268 6.268 19 C -0.078 4.078 20 H 0.156 0.844 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.568 -6.206 4.534 7.844 hybrid contribution 0.529 0.242 0.387 0.699 sum 2.097 -5.964 4.920 8.011 Atomic orbital electron populations 1.70058 1.06139 1.26990 1.46116 1.25087 0.94860 0.99605 0.93398 0.86406 0.80049 0.82992 0.77749 1.19473 1.20752 1.20686 1.20803 0.92823 0.88871 1.54443 0.91234 1.20437 0.87556 0.90461 0.85426 0.94208 1.89679 1.74226 1.16606 1.44425 1.22423 0.93806 0.86754 0.95026 0.91686 1.22003 0.85584 0.95672 0.95240 1.86628 1.35878 1.79783 1.34048 1.25189 0.99666 1.04074 0.84374 0.84691 1.91481 1.81606 1.33540 1.20198 1.26498 1.01122 0.83274 0.96857 0.84394 0.92591 0.92770 0.93309 0.78275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.07 55.43 0.72 -25.03 14 2 C 0.08 2.19 5.43 -17.82 -0.10 2.10 14 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 14 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 7 C -0.53 -14.90 8.85 -34.44 -0.30 -15.20 14 8 H 0.07 1.83 7.63 -52.49 -0.40 1.43 14 9 C 0.22 5.83 3.02 -27.11 -0.08 5.74 14 10 H 0.04 1.18 8.14 -51.93 -0.42 0.76 14 11 O -0.33 -8.89 10.74 -35.27 -0.38 -9.27 14 12 C 0.08 1.70 3.54 -25.95 -0.09 1.61 14 13 H 0.07 1.47 8.14 -51.93 -0.42 1.05 14 14 C 0.09 1.56 6.77 37.16 0.25 1.81 14 15 O -0.56 -9.87 13.66 -35.27 -0.48 -10.36 14 16 C -0.08 -1.48 7.58 -25.16 -0.19 -1.67 14 17 H 0.14 2.07 8.07 -51.93 -0.42 1.65 14 18 O -0.35 -7.75 14.41 -35.23 -0.51 -8.25 14 19 C -0.02 -0.47 7.55 -25.16 -0.19 -0.66 14 20 H 0.14 2.76 7.95 -51.93 -0.41 2.34 14 21 H 0.26 7.41 8.31 -40.82 -0.34 7.08 14 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 14 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 14 24 H 0.37 4.18 9.12 45.56 0.42 4.59 14 LS Contribution 219.14 15.07 3.30 3.30 Total: -1.00 -33.48 219.14 -4.71 -38.19 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.64 Total: 1.56 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.70 Total: -6.26 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.72 Total: -25.03 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.37 Total: -27.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -33.48 -4.71 -38.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307422721.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.917 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds