Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48497 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47087 * 300.00491 * 3 2 1 6 6 H 1.48496 * 109.47071 * 60.00204 * 3 2 1 7 7 C 1.37870 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00380 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.33128 * 57.75038 * 9 7 2 11 11 O 1.44423 * 110.46492 * 295.43891 * 9 7 2 12 12 C 1.44427 * 105.27626 * 200.60596 * 11 9 7 13 13 H 1.09002 * 110.46660 * 281.63854 * 12 11 9 14 14 C 1.52999 * 110.37346 * 159.33911 * 12 11 9 15 15 O 1.42905 * 109.46728 * 69.62448 * 14 12 11 16 16 C 1.54482 * 104.80046 * 40.51001 * 12 11 9 17 17 H 1.09001 * 118.05003 * 117.97463 * 16 12 11 18 18 O 1.42891 * 118.02464 * 275.89340 * 16 12 11 19 19 C 1.42895 * 65.45723 * 89.15298 * 18 16 12 20 20 H 1.08993 * 120.06504 * 111.98014 * 19 18 16 21 21 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47486 * 309.62386 * 14 12 11 23 23 H 1.09001 * 109.47362 * 189.61664 * 14 12 11 24 24 H 0.96696 * 114.00036 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5890 -2.5542 -0.8647 11 8 0.4957 -2.6461 1.2216 12 6 0.2388 -4.0623 1.3422 13 1 -0.5788 -4.3586 0.6851 14 6 -0.0875 -4.4228 2.7929 15 8 -1.3633 -3.8822 3.1425 16 6 1.5551 -4.7409 0.9025 17 1 2.0847 -5.3533 1.6323 18 8 1.7703 -4.9462 -0.4951 19 6 2.2363 -3.6889 -0.0012 20 1 3.3052 -3.4792 0.0361 21 1 -0.4850 0.8400 0.0004 22 1 0.6758 -4.0076 3.4510 23 1 -0.1103 -5.5071 2.9015 24 1 -1.6357 -4.0726 4.0506 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307422721.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -116.569928 kcal Electronic energy + Delta-G solvation = -11606.194222 eV Core-core repulsion = 9292.631264 eV Total energy + Delta-G solvation = -2313.562958 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.25375 -38.19334 -37.10136 -34.76528 -31.42459 -29.95891 -26.95638 -24.86034 -22.71522 -21.96826 -19.08348 -18.47267 -17.32061 -16.91727 -16.68997 -16.24076 -15.76928 -15.17288 -14.85192 -14.23203 -14.07327 -13.19439 -12.86457 -12.77192 -12.41610 -12.06190 -11.65849 -11.22521 -11.10192 -10.88741 -10.75907 -10.05667 -8.23116 -6.46576 1.43499 1.44794 1.58525 2.16614 2.37739 2.76909 2.97631 3.29975 3.52312 3.74987 3.99021 4.18132 4.25823 4.29027 4.46669 4.62484 4.77710 4.96491 5.24316 5.64423 5.93306 6.31295 6.72812 7.00836 7.29966 8.87275 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.044166 B = 0.014012 C = 0.011439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.813960 B = 1997.783031 C = 2447.230298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.017 3.983 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.208 3.792 10 H -0.012 1.012 11 O -0.364 6.364 12 C 0.058 3.942 13 H 0.038 0.962 14 C 0.100 3.900 15 O -0.593 6.593 16 C -0.041 4.041 17 H 0.195 0.805 18 O -0.367 6.367 19 C -0.035 4.035 20 H 0.168 0.832 21 H 0.265 0.735 22 H 0.067 0.933 23 H 0.098 0.902 24 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -7.198 6.757 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.102 0.898 9 C 0.152 3.848 10 H 0.005 0.995 11 O -0.284 6.284 12 C -0.001 4.001 13 H 0.056 0.944 14 C 0.022 3.978 15 O -0.402 6.402 16 C -0.098 4.098 17 H 0.212 0.788 18 O -0.287 6.287 19 C -0.091 4.091 20 H 0.185 0.815 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.116 0.884 24 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.256 -6.937 6.016 9.742 hybrid contribution -0.111 0.366 -0.064 0.387 sum 3.145 -6.571 5.952 9.407 Atomic orbital electron populations 1.70223 1.08253 1.28018 1.47881 1.26140 0.95694 1.03921 0.92743 0.85197 0.79264 0.77560 0.77693 1.17606 1.20309 1.20434 1.21267 0.93693 0.89693 1.53938 0.89787 1.20230 0.87755 0.92773 0.84041 0.99486 1.89591 1.74682 1.20390 1.43728 1.22860 0.94327 0.84565 0.98304 0.94447 1.22042 0.85596 0.98405 0.91731 1.86555 1.36429 1.80544 1.36657 1.25676 0.97659 1.02327 0.84114 0.78807 1.91475 1.81787 1.33073 1.22414 1.26196 1.01222 0.81991 0.99701 0.81544 0.92594 0.91433 0.88429 0.75104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.07 21.45 0.28 -56.13 14 2 C 0.02 0.99 5.43 84.65 0.46 1.45 14 3 Si 0.98 43.62 29.54 68.60 2.03 45.64 14 4 H -0.25 -10.41 7.11 99.48 0.71 -9.71 14 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 14 7 C -0.55 -31.10 8.85 25.60 0.23 -30.87 14 8 H 0.08 4.36 7.63 -2.91 -0.02 4.34 14 9 C 0.21 11.52 3.02 30.35 0.09 11.62 14 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 14 11 O -0.36 -20.04 10.74 -148.94 -1.60 -21.64 14 12 C 0.06 2.47 3.54 31.10 0.11 2.58 14 13 H 0.04 1.75 8.14 -2.39 -0.02 1.73 14 14 C 0.10 3.05 6.77 71.98 0.49 3.54 14 15 O -0.59 -20.02 13.66 -148.94 -2.03 -22.05 14 16 C -0.04 -1.50 7.58 31.61 0.24 -1.26 14 17 H 0.20 4.78 8.07 -2.39 -0.02 4.76 14 18 O -0.37 -15.90 14.41 -148.98 -2.15 -18.04 14 19 C -0.03 -1.52 7.55 31.61 0.24 -1.28 14 20 H 0.17 6.28 7.95 -2.39 -0.02 6.26 14 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 14 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 14 23 H 0.10 2.06 8.14 -2.39 -0.02 2.04 14 24 H 0.40 8.03 9.12 -74.06 -0.68 7.35 14 Total: -1.00 -75.73 219.14 -1.08 -76.81 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.54 Total: 9.66 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 1.85 Total: -14.24 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -5.78 Total: -61.74 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -75.73 -1.08 -76.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307422721.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.758 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds