Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99325 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47275 * 299.99975 * 3 2 1 6 6 H 1.48496 * 109.47306 * 60.00434 * 3 2 1 7 7 C 1.37867 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99987 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.33553 * 57.74463 * 9 7 2 11 11 O 1.44527 * 110.49223 * 295.53697 * 9 7 2 12 12 C 1.44415 * 105.22870 * 200.70897 * 11 9 7 13 13 H 1.09000 * 110.37635 * 281.47813 * 12 11 9 14 14 C 1.53000 * 110.37515 * 159.24794 * 12 11 9 15 15 O 1.42903 * 109.46726 * 67.94997 * 14 12 11 16 16 C 1.54481 * 104.90164 * 40.36271 * 12 11 9 17 17 H 1.08997 * 118.05672 * 195.88488 * 16 12 11 18 18 O 1.42899 * 118.02320 * 37.96996 * 16 12 11 19 19 C 1.46417 * 64.54672 * 270.01480 * 18 16 12 20 20 H 1.09001 * 120.31329 * 248.37468 * 19 18 16 21 21 H 0.96992 * 120.00466 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47398 * 187.95242 * 14 12 11 23 23 H 1.09001 * 109.47194 * 307.95422 * 14 12 11 24 24 H 0.96700 * 113.99509 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.5898 -2.5546 -0.8641 11 8 0.4924 -2.6452 1.2218 12 6 0.2383 -4.0617 1.3434 13 1 -0.5788 -4.3585 0.6859 14 6 -0.0890 -4.4216 2.7940 15 8 -1.3485 -3.8504 3.1538 16 6 1.5549 -4.7405 0.9049 17 1 1.5276 -5.8025 0.6610 18 8 2.7869 -4.1250 1.2860 19 6 2.2366 -3.6888 0.0011 20 1 2.7421 -3.9462 -0.9297 21 1 -0.4850 0.8399 0.0004 22 1 -0.1388 -5.5056 2.8970 23 1 0.6884 -4.0296 3.4499 24 1 -1.6201 -4.0382 4.0627 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307422723.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -84.814032 kcal Electronic energy + Delta-G solvation = -11663.183266 eV Core-core repulsion = 9350.997347 eV Total energy + Delta-G solvation = -2312.185919 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.21200 -36.45133 -35.13635 -32.62176 -29.60234 -28.05464 -25.41265 -23.06764 -20.44036 -20.08506 -17.08953 -16.59464 -16.34037 -15.33950 -14.66032 -14.34679 -13.89099 -13.54677 -12.66238 -12.19687 -11.74120 -11.70132 -11.17324 -10.91408 -10.62612 -10.11615 -10.03543 -9.67166 -9.62698 -8.70530 -8.50627 -8.17618 -6.05842 -4.19445 3.30269 3.38135 3.42807 3.87400 4.39063 4.43920 4.68010 4.96292 5.22109 5.39852 5.61217 5.65786 5.78687 5.91170 6.19754 6.28173 6.39253 6.55926 7.19257 7.85066 7.99285 8.04159 8.39337 8.89497 9.51161 11.01699 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.046667 B = 0.014191 C = 0.011876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.853625 B = 1972.578463 C = 2357.123347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.210 3.790 10 H 0.057 0.943 11 O -0.332 6.332 12 C 0.076 3.924 13 H 0.079 0.921 14 C 0.089 3.911 15 O -0.562 6.562 16 C -0.081 4.081 17 H 0.132 0.868 18 O -0.337 6.337 19 C -0.020 4.020 20 H 0.139 0.861 21 H 0.263 0.737 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -8.255 1.480 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.155 3.845 10 H 0.075 0.925 11 O -0.250 6.250 12 C 0.016 3.984 13 H 0.096 0.904 14 C 0.011 3.989 15 O -0.365 6.365 16 C -0.139 4.139 17 H 0.150 0.850 18 O -0.257 6.257 19 C -0.077 4.077 20 H 0.156 0.844 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.148 -7.722 1.237 7.822 hybrid contribution 0.636 0.339 0.634 0.960 sum 0.488 -7.383 1.871 7.632 Atomic orbital electron populations 1.70030 1.06061 1.26899 1.46701 1.25100 0.94852 0.99564 0.93464 0.86449 0.80204 0.83151 0.77678 1.19529 1.20769 1.20746 1.20886 0.92945 0.89128 1.53568 0.91451 1.20647 0.86260 0.91747 0.85875 0.92548 1.89721 1.74362 1.16389 1.44568 1.22650 0.93041 0.87520 0.95141 0.90375 1.22127 0.85600 0.95198 0.95994 1.86630 1.37637 1.78489 1.33779 1.25149 0.86650 0.97074 1.05052 0.85024 1.92023 1.32902 1.62938 1.37850 1.26498 0.98086 0.97085 0.85985 0.84384 0.92687 0.93542 0.93064 0.78536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.94 13.07 55.43 0.72 -25.22 14 2 C 0.08 2.21 5.43 -17.82 -0.10 2.11 14 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 14 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 14 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14 7 C -0.53 -15.23 8.86 -34.44 -0.31 -15.54 14 8 H 0.07 1.92 7.77 -52.48 -0.41 1.51 14 9 C 0.21 5.54 3.05 -27.10 -0.08 5.46 14 10 H 0.06 1.51 8.14 -51.93 -0.42 1.09 14 11 O -0.33 -9.14 10.64 -54.10 -0.58 -9.72 14 12 C 0.08 1.61 3.55 -25.95 -0.09 1.52 14 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 14 14 C 0.09 1.61 6.81 37.16 0.25 1.86 14 15 O -0.56 -10.38 13.66 -35.63 -0.49 -10.87 14 16 C -0.08 -1.56 7.44 -25.16 -0.19 -1.75 14 17 H 0.13 1.92 8.14 -51.93 -0.42 1.50 14 18 O -0.34 -7.83 14.48 -50.93 -0.74 -8.57 14 19 C -0.02 -0.44 7.64 -25.16 -0.19 -0.63 14 20 H 0.14 2.49 8.14 -51.93 -0.42 2.07 14 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 14 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 14 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 14 24 H 0.37 4.55 9.12 45.56 0.42 4.97 14 LS Contribution 219.54 15.07 3.31 3.31 Total: -1.00 -34.66 219.54 -5.15 -39.81 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -1.66 Total: 1.44 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.70 Total: -6.97 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.72 Total: -25.22 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.80 Total: -29.15 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -34.66 -5.15 -39.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307422723.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.000 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds