Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99325 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47275 * 299.99975 * 3 2 1 6 6 H 1.48496 * 109.47306 * 60.00434 * 3 2 1 7 7 C 1.37867 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99987 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.33553 * 57.74463 * 9 7 2 11 11 O 1.44527 * 110.49223 * 295.53697 * 9 7 2 12 12 C 1.44415 * 105.22870 * 200.70897 * 11 9 7 13 13 H 1.09000 * 110.37635 * 281.47813 * 12 11 9 14 14 C 1.53000 * 110.37515 * 159.24794 * 12 11 9 15 15 O 1.42903 * 109.46726 * 67.94997 * 14 12 11 16 16 C 1.54481 * 104.90164 * 40.36271 * 12 11 9 17 17 H 1.08997 * 118.05672 * 195.88488 * 16 12 11 18 18 O 1.42899 * 118.02320 * 37.96996 * 16 12 11 19 19 C 1.46417 * 64.54672 * 270.01480 * 18 16 12 20 20 H 1.09001 * 120.31329 * 248.37468 * 19 18 16 21 21 H 0.96992 * 120.00466 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47398 * 187.95242 * 14 12 11 23 23 H 1.09001 * 109.47194 * 307.95422 * 14 12 11 24 24 H 0.96700 * 113.99509 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.5898 -2.5546 -0.8641 11 8 0.4924 -2.6452 1.2218 12 6 0.2383 -4.0617 1.3434 13 1 -0.5788 -4.3585 0.6859 14 6 -0.0890 -4.4216 2.7940 15 8 -1.3485 -3.8504 3.1538 16 6 1.5549 -4.7405 0.9049 17 1 1.5276 -5.8025 0.6610 18 8 2.7869 -4.1250 1.2860 19 6 2.2366 -3.6888 0.0011 20 1 2.7421 -3.9462 -0.9297 21 1 -0.4850 0.8399 0.0004 22 1 -0.1388 -5.5056 2.8970 23 1 0.6884 -4.0296 3.4499 24 1 -1.6201 -4.0382 4.0627 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307422723.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -114.334947 kcal Electronic energy + Delta-G solvation = -11664.463389 eV Core-core repulsion = 9350.997347 eV Total energy + Delta-G solvation = -2313.466042 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.91382 -37.94715 -36.92891 -34.73924 -31.31504 -29.95432 -27.24998 -24.81313 -22.24336 -21.70043 -18.72510 -18.57511 -17.89438 -17.09725 -16.65605 -16.07949 -15.50694 -15.12838 -14.51982 -13.89357 -13.59861 -13.54049 -12.88882 -12.83649 -12.42986 -12.06964 -11.72261 -11.54052 -11.02399 -10.78718 -10.34980 -10.07326 -8.22315 -6.43894 1.38003 1.40175 1.53023 2.24518 2.41167 2.77444 3.07764 3.23561 3.58151 3.75815 4.08166 4.25583 4.28346 4.36953 4.58772 4.71246 4.81943 4.96133 5.22902 5.64676 5.94863 6.40949 6.77236 6.95179 7.31344 8.85798 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.046667 B = 0.014191 C = 0.011876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.853625 B = 1972.578463 C = 2357.123347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.199 3.801 10 H 0.040 0.960 11 O -0.380 6.380 12 C 0.054 3.946 13 H 0.089 0.911 14 C 0.092 3.908 15 O -0.589 6.589 16 C -0.045 4.045 17 H 0.193 0.807 18 O -0.370 6.370 19 C -0.035 4.035 20 H 0.176 0.824 21 H 0.265 0.735 22 H 0.099 0.901 23 H 0.033 0.967 24 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 -9.519 1.600 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.079 0.921 9 C 0.143 3.857 10 H 0.057 0.943 11 O -0.300 6.300 12 C -0.005 4.005 13 H 0.107 0.893 14 C 0.015 3.985 15 O -0.397 6.397 16 C -0.102 4.102 17 H 0.209 0.791 18 O -0.291 6.291 19 C -0.091 4.091 20 H 0.193 0.807 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.051 0.949 24 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.359 -9.006 1.370 9.117 hybrid contribution 0.393 0.659 0.655 1.009 sum 0.752 -8.348 2.025 8.623 Atomic orbital electron populations 1.70153 1.07664 1.27843 1.48026 1.25994 0.95720 1.03335 0.92948 0.85381 0.78965 0.78516 0.77984 1.18849 1.19206 1.20821 1.21281 0.93018 0.91082 1.53580 0.92054 1.20530 0.87140 0.92890 0.85140 0.94292 1.89605 1.74986 1.20762 1.44671 1.23158 0.94738 0.84819 0.97780 0.89312 1.22141 0.84953 0.97922 0.93490 1.86561 1.37687 1.79231 1.36193 1.25618 0.84388 0.98986 1.01167 0.79079 1.91999 1.34459 1.63883 1.38769 1.26374 0.99240 0.96606 0.86845 0.80742 0.92578 0.88351 0.94893 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.56 13.07 21.44 0.28 -55.28 14 2 C 0.02 1.32 5.43 84.65 0.46 1.78 14 3 Si 0.97 45.33 29.54 68.60 2.03 47.36 14 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 14 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 14 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 14 7 C -0.55 -32.51 8.86 25.60 0.23 -32.28 14 8 H 0.06 3.55 7.77 -2.91 -0.02 3.53 14 9 C 0.20 10.63 3.05 30.35 0.09 10.72 14 10 H 0.04 2.17 8.14 -2.39 -0.02 2.15 14 11 O -0.38 -21.30 10.64 -130.94 -1.39 -22.69 14 12 C 0.05 2.19 3.55 31.10 0.11 2.30 14 13 H 0.09 3.39 8.14 -2.39 -0.02 3.37 14 14 C 0.09 3.14 6.81 71.98 0.49 3.63 14 15 O -0.59 -20.89 13.66 -148.60 -2.03 -22.92 14 16 C -0.04 -1.58 7.44 31.61 0.24 -1.35 14 17 H 0.19 4.43 8.14 -2.39 -0.02 4.41 14 18 O -0.37 -16.57 14.48 -133.97 -1.94 -18.51 14 19 C -0.03 -1.47 7.64 31.61 0.24 -1.23 14 20 H 0.18 5.91 8.14 -2.39 -0.02 5.89 14 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 14 22 H 0.10 2.33 8.14 -2.39 -0.02 2.32 14 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 14 24 H 0.39 8.97 9.12 -74.06 -0.68 8.30 14 Total: -1.00 -76.83 219.54 -0.66 -77.49 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.54 Total: 10.96 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 1.86 Total: -16.41 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.28 Total: -55.28 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -5.36 Total: -64.12 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.83 -0.66 -77.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307422723.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.843 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds