Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30060 * 126.18848 * 2 1 4 4 O 1.21290 * 110.49419 * 179.97438 * 3 2 1 5 5 C 1.34155 * 109.70820 * 0.02562 * 4 3 2 6 6 S 1.76203 * 126.67814 * 179.97438 * 5 4 3 7 7 C 1.76203 * 99.99688 * 359.97438 * 6 5 4 8 8 H 1.07997 * 119.99911 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31529 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00104 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47084 * 59.99514 * 11 9 7 13 13 H 1.48499 * 109.47085 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46596 * 299.99567 * 11 9 7 15 15 N 1.32212 * 106.64656 * 359.77197 * 5 4 3 16 16 H 1.09001 * 109.46953 * 90.02360 * 1 2 3 17 17 H 1.09000 * 109.47318 * 210.01958 * 1 2 3 18 18 H 1.09000 * 109.47161 * 330.02588 * 1 2 3 19 19 H 0.96995 * 120.00645 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2750 1.0497 0.0000 4 8 3.4427 0.7216 0.0005 5 6 3.5366 -0.6167 0.0003 6 16 5.0199 -1.5677 0.0003 7 6 6.2140 -0.2719 -0.0003 8 1 5.8921 0.7590 -0.0009 9 6 7.5683 -0.5762 -0.0010 10 7 7.9603 -1.8317 -0.0008 11 14 8.8342 0.7975 -0.0009 12 1 8.6554 1.6353 1.2120 13 1 10.1992 0.2127 -0.0024 14 1 8.6543 1.6364 -1.2130 15 7 2.2995 -1.0832 0.0047 16 1 -0.3633 -0.0004 -1.0277 17 1 -0.3634 -0.8898 0.5141 18 1 -0.3633 0.8902 0.5134 19 1 8.9066 -2.0444 -0.0017 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307532845.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = 31.259464 kcal Electronic energy + Delta-G solvation = -8988.798716 eV Core-core repulsion = 7020.858649 eV Total energy + Delta-G solvation = -1967.940067 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -46.13723 -36.80038 -34.88636 -33.52598 -29.97265 -27.95776 -25.19735 -23.32605 -20.33701 -18.91963 -18.75211 -17.19515 -16.94753 -15.14465 -14.75047 -14.38358 -13.93362 -13.47655 -13.18975 -13.05867 -13.00798 -12.56927 -12.10331 -11.90257 -11.58254 -11.14360 -11.05917 -9.07615 -8.63287 -6.50392 0.13114 0.39605 1.33403 1.35956 1.45187 1.51787 1.90498 2.43917 2.79937 3.09650 3.25683 3.60470 4.60966 4.62891 4.69487 5.08046 5.17824 5.30898 6.00635 6.82285 7.24735 8.45246 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.088217 B = 0.011187 C = 0.009982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.321215 B = 2502.246712 C = 2804.423462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.175 3.825 3 N -0.436 5.436 4 O 0.036 5.964 5 C 0.141 3.859 6 S 0.219 5.781 7 C -0.601 4.601 8 H 0.092 0.908 9 C 0.044 3.956 10 N -0.894 5.894 11 Si 1.000 3.000 12 H -0.263 1.263 13 H -0.266 1.266 14 H -0.263 1.263 15 N -0.526 5.526 16 H 0.104 0.896 17 H 0.103 0.897 18 H 0.100 0.900 19 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 2.542 -0.024 6.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 N -0.161 5.161 4 O -0.011 6.011 5 C -0.180 4.180 6 S 0.448 5.552 7 C -0.748 4.748 8 H 0.110 0.890 9 C -0.165 4.165 10 N -0.527 5.527 11 Si 0.820 3.180 12 H -0.188 1.188 13 H -0.190 1.190 14 H -0.188 1.188 15 N -0.269 5.269 16 H 0.123 0.877 17 H 0.122 0.878 18 H 0.118 0.882 19 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.442 1.708 -0.016 6.665 hybrid contribution 0.818 1.732 -0.009 1.915 sum -5.625 3.440 -0.026 6.593 Atomic orbital electron populations 1.20331 0.79592 1.05706 1.05547 1.26795 1.02220 0.83129 0.97875 1.74295 0.89682 1.25284 1.26830 1.85439 1.22451 1.24153 1.69095 1.32273 1.03083 0.84968 0.97690 1.83994 0.83254 1.04424 1.83479 1.23498 0.93372 0.95385 1.62549 0.89027 1.25985 0.99333 0.99613 0.91572 1.69910 1.19045 1.19110 1.44670 0.84968 0.76056 0.77203 0.79748 1.18767 1.19008 1.18776 1.72173 0.98066 1.29404 1.27250 0.87717 0.87824 0.88174 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.30 10.51 71.24 0.75 -0.56 13 2 C 0.17 6.76 8.20 138.52 1.14 7.90 13 3 N -0.44 -19.04 12.15 -58.56 -0.71 -19.75 13 4 O 0.04 1.74 10.31 70.08 0.72 2.46 13 5 C 0.14 6.79 8.48 130.31 1.10 7.90 13 6 S 0.22 10.97 21.89 -56.49 -1.24 9.73 13 7 C -0.60 -31.90 9.41 67.96 0.64 -31.26 13 8 H 0.09 4.86 7.01 -2.91 -0.02 4.84 13 9 C 0.04 2.24 5.49 84.87 0.47 2.71 13 10 N -0.89 -47.22 13.22 21.64 0.29 -46.93 13 11 Si 1.00 39.89 29.55 68.60 2.03 41.91 13 12 H -0.26 -10.26 7.11 99.48 0.71 -9.56 13 13 H -0.27 -9.95 7.11 99.48 0.71 -9.24 13 14 H -0.26 -10.27 7.11 99.48 0.71 -9.56 13 15 N -0.53 -23.30 11.59 -309.27 -3.58 -26.89 13 16 H 0.10 2.11 8.14 -2.39 -0.02 2.09 13 17 H 0.10 2.17 8.14 -2.39 -0.02 2.15 13 18 H 0.10 2.04 8.14 -2.39 -0.02 2.02 13 19 H 0.29 13.97 8.31 -92.71 -0.77 13.20 13 Total: -1.00 -59.71 201.86 2.87 -56.84 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: 1.27 Total: -4.06 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.09 Total: -13.32 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.01 Total: -93.57 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.72 Total: 2.46 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 16 Polarization: 10.97 SS G_CDS: -1.24 Total: 9.73 kcal Total: -59.71 2.87 -56.84 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532845.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.099 kcal (2) G-P(sol) polarization free energy of solvation -59.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds