Wall clock time and date at job start Mon Mar 30 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.99357 * 2 1 4 4 C 1.54108 * 109.87880 * 121.08386 * 2 1 3 5 5 C 1.54802 * 104.18942 * 121.45319 * 4 2 1 6 6 O 1.42900 * 110.90858 * 262.64662 * 5 4 2 7 7 C 1.50697 * 110.90841 * 139.07973 * 5 4 2 8 8 H 1.08004 * 120.00159 * 2.13401 * 7 5 4 9 9 C 1.37880 * 120.00414 * 182.13382 * 7 5 4 10 10 N 1.31521 * 119.99867 * 7.40376 * 9 7 5 11 11 Si 1.86797 * 120.00413 * 187.40965 * 9 7 5 12 12 H 1.48503 * 109.46955 * 269.99840 * 11 9 7 13 13 H 1.48497 * 109.47518 * 149.99800 * 11 9 7 14 14 H 1.48500 * 109.47130 * 29.99780 * 11 9 7 15 15 C 1.54993 * 102.09341 * 20.88176 * 5 4 2 16 16 O 1.43748 * 109.88038 * 238.90998 * 2 1 3 17 17 H 1.09004 * 109.47091 * 298.92020 * 1 2 3 18 18 H 1.09001 * 109.47074 * 58.91568 * 1 2 3 19 19 H 1.08997 * 109.47592 * 178.91531 * 1 2 3 20 20 H 1.09007 * 109.47323 * 181.08565 * 3 2 1 21 21 H 1.09000 * 109.46885 * 301.08248 * 3 2 1 22 22 H 1.09003 * 109.47442 * 61.08209 * 3 2 1 23 23 H 1.08998 * 110.48455 * 2.77666 * 4 2 1 24 24 H 1.08998 * 110.48440 * 240.13035 * 4 2 1 25 25 H 0.96706 * 114.00495 * 171.30331 * 6 5 4 26 26 H 0.97004 * 119.99586 * 354.36420 * 10 9 7 27 27 H 1.09004 * 110.62070 * 81.48080 * 15 5 4 28 28 H 1.09006 * 110.62205 * 204.47625 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0539 -0.7482 1.2412 5 6 2.9194 -1.8914 0.6577 6 8 2.1782 -3.1116 0.5960 7 6 4.1825 -2.0726 1.4594 8 1 4.3587 -1.4643 2.3343 9 6 5.1133 -3.0147 1.0760 10 7 4.9716 -3.6526 -0.0653 11 14 6.5756 -3.3853 2.1777 12 1 7.7039 -2.4879 1.8213 13 1 6.9899 -4.7991 1.9917 14 1 6.1956 -3.1635 3.5960 15 6 3.2378 -1.3642 -0.7646 16 8 2.0187 -0.6981 -1.1576 17 1 -0.3633 0.4970 0.8995 18 1 -0.3633 0.5306 -0.8801 19 1 -0.3634 -1.0274 -0.0195 20 1 3.1429 1.4279 -0.0195 21 1 1.6787 1.9606 -0.8801 22 1 1.7103 1.9492 0.8995 23 1 1.2245 -1.1548 1.8198 24 1 2.6618 -0.0859 1.8574 25 1 2.6284 -3.8216 0.1180 26 1 4.1720 -3.5210 -0.5985 27 1 4.0685 -0.6590 -0.7355 28 1 3.4584 -2.1909 -1.4400 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307686488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:12 Heat of formation + Delta-G solvation = -128.991890 kcal Electronic energy + Delta-G solvation = -12302.726126 eV Core-core repulsion = 10124.457606 eV Total energy + Delta-G solvation = -2178.268520 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.01424 -37.44539 -34.34870 -34.01889 -31.29168 -28.31219 -26.81533 -26.68153 -22.05284 -21.03822 -19.94150 -17.43825 -16.76651 -16.33647 -16.01352 -15.63312 -14.96041 -14.49455 -14.18652 -13.78497 -13.37560 -13.04955 -12.86079 -12.75666 -12.57860 -12.41854 -12.21903 -11.95296 -11.71863 -11.31296 -10.72340 -10.53882 -10.07545 -8.70513 -6.53384 1.52768 1.60424 1.79352 2.48388 2.95941 2.97129 3.61186 3.80909 4.00206 4.02620 4.26227 4.37788 4.63847 4.68227 4.72904 4.81294 4.84058 4.94524 5.00847 5.17554 5.24034 5.39484 5.77650 6.00665 6.04544 6.45327 6.93244 7.26386 8.60716 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.063938 B = 0.013346 C = 0.012828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.817038 B = 2097.465903 C = 2182.120174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.084 3.916 3 C -0.153 4.153 4 C -0.121 4.121 5 C 0.190 3.810 6 O -0.588 6.588 7 C -0.631 4.631 8 H 0.055 0.945 9 C -0.016 4.016 10 N -0.925 5.925 11 Si 1.121 2.879 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.274 1.274 15 C 0.037 3.963 16 O -0.395 6.395 17 H 0.090 0.910 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.044 0.956 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.364 0.636 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 6.905 1.642 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 C -0.211 4.211 4 C -0.159 4.159 5 C 0.151 3.849 6 O -0.395 6.395 7 C -0.668 4.668 8 H 0.073 0.927 9 C -0.215 4.215 10 N -0.565 5.565 11 Si 0.942 3.058 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.199 1.199 15 C -0.040 4.040 16 O -0.316 6.316 17 H 0.109 0.891 18 H 0.089 0.911 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.212 0.788 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.189 6.415 1.859 7.401 hybrid contribution -0.781 0.259 -0.471 0.948 sum -3.970 6.674 1.388 7.889 Atomic orbital electron populations 1.21851 0.91597 1.02101 1.03474 1.22396 0.95944 0.92567 0.84582 1.22187 1.00849 0.94515 1.03519 1.22924 0.99281 0.95905 0.97744 1.20555 0.90086 0.82733 0.91557 1.86296 1.49412 1.24080 1.79697 1.22705 1.05525 1.23822 1.14765 0.92666 1.27331 1.04444 0.92305 0.97456 1.71055 1.29072 1.44643 1.11769 0.82873 0.72258 0.76905 0.73783 1.19657 1.20655 1.19935 1.24251 0.86394 0.95335 0.98003 1.88741 1.40164 1.67894 1.34752 0.89087 0.91088 0.93581 0.93709 0.91098 0.89379 0.91127 0.89946 0.78793 0.92547 0.93264 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.67 71.98 0.62 -3.49 15 2 C 0.08 3.18 1.19 -10.42 -0.01 3.16 15 3 C -0.15 -4.74 8.61 71.98 0.62 -4.12 15 4 C -0.12 -5.20 5.61 31.58 0.18 -5.03 15 5 C 0.19 9.76 0.94 -10.24 -0.01 9.75 15 6 O -0.59 -31.53 13.09 -148.98 -1.95 -33.48 15 7 C -0.63 -34.66 8.23 25.60 0.21 -34.45 15 8 H 0.06 2.99 7.58 -2.91 -0.02 2.97 15 9 C -0.02 -0.86 5.29 84.65 0.45 -0.41 15 10 N -0.92 -52.71 13.05 21.45 0.28 -52.43 15 11 Si 1.12 48.22 29.91 68.60 2.05 50.27 15 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 13 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 14 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 15 C 0.04 1.85 6.09 72.66 0.44 2.30 15 16 O -0.40 -17.95 10.86 -148.98 -1.62 -19.57 15 17 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 18 H 0.07 1.94 8.14 -2.39 -0.02 1.93 15 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.04 1.50 8.11 -2.38 -0.02 1.48 15 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.07 2.96 7.64 -2.39 -0.02 2.95 15 24 H 0.08 3.38 7.25 -2.39 -0.02 3.37 15 25 H 0.36 19.38 6.71 -74.05 -0.50 18.89 15 26 H 0.26 14.73 3.65 -92.71 -0.34 14.39 15 27 H 0.05 2.48 8.01 -2.39 -0.02 2.46 15 28 H 0.07 3.53 6.35 -2.38 -0.02 3.52 15 Total: -1.00 -61.97 228.88 2.34 -59.63 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 1.08 Total: 27.85 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 2.50 Total: -32.28 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.28 Total: -52.43 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -3.57 Total: -53.05 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.05 Total: 50.27 kcal Total: -61.97 2.34 -59.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307686488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.363 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds