Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.86972 * 2 1 4 4 C 1.54103 * 109.87825 * 121.00270 * 2 1 3 5 5 C 1.54811 * 104.18319 * 117.39581 * 4 2 1 6 6 O 1.42902 * 110.90759 * 97.31947 * 5 4 2 7 7 C 1.50700 * 110.90303 * 220.88303 * 5 4 2 8 8 H 1.07997 * 120.00116 * 354.77098 * 7 5 4 9 9 C 1.37879 * 119.99485 * 174.76679 * 7 5 4 10 10 N 1.31509 * 120.00449 * 4.93533 * 9 7 5 11 11 Si 1.86809 * 119.99664 * 184.93616 * 9 7 5 12 12 H 1.48498 * 109.47168 * 94.99821 * 11 9 7 13 13 H 1.48498 * 109.47142 * 214.99848 * 11 9 7 14 14 H 1.48500 * 109.47127 * 334.99682 * 11 9 7 15 15 C 1.54996 * 102.09418 * 339.11893 * 5 4 2 16 16 O 1.43732 * 109.87841 * 238.99146 * 2 1 3 17 17 H 1.08996 * 109.47509 * 59.29927 * 1 2 3 18 18 H 1.09000 * 109.47355 * 179.30337 * 1 2 3 19 19 H 1.09008 * 109.47338 * 299.30131 * 1 2 3 20 20 H 1.09004 * 109.47550 * 60.69375 * 3 2 1 21 21 H 1.08996 * 109.47379 * 180.69878 * 3 2 1 22 22 H 1.09004 * 109.46817 * 300.70188 * 3 2 1 23 23 H 1.09001 * 110.48357 * 236.07448 * 4 2 1 24 24 H 1.08999 * 110.48690 * 358.72053 * 4 2 1 25 25 H 0.96693 * 113.99994 * 179.97438 * 6 5 4 26 26 H 0.96999 * 120.00130 * 180.02562 * 10 9 7 27 27 H 1.09000 * 110.61417 * 155.52932 * 15 5 4 28 28 H 1.08997 * 110.61689 * 278.36498 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7465 1.2422 5 6 2.8324 -1.9515 0.6603 6 8 4.2324 -1.6718 0.5973 7 6 2.5715 -3.1991 1.4643 8 1 1.9813 -3.1461 2.3672 9 6 3.0861 -4.4082 1.0470 10 7 3.8842 -4.4581 0.0029 11 14 2.6497 -5.9757 1.9648 12 1 1.5003 -6.6370 1.2964 13 1 3.8180 -6.8924 1.9623 14 1 2.2839 -5.6438 3.3652 15 6 2.2280 -2.0724 -0.7619 16 8 2.0187 -0.6963 -1.1585 17 1 -0.3634 0.5246 -0.8836 18 1 -0.3634 -1.0276 -0.0125 19 1 -0.3634 0.5030 0.8962 20 1 1.7005 1.9517 0.8961 21 1 3.1399 1.4314 -0.0125 22 1 1.6800 1.9589 -0.8837 23 1 2.7196 -0.1052 1.8200 24 1 1.2237 -1.0905 1.8589 25 1 4.7626 -2.3971 0.2398 26 1 4.2460 -5.3088 -0.2908 27 1 2.9295 -2.5632 -1.4365 28 1 1.2827 -2.6142 -0.7323 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307686489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -110.539699 kcal Electronic energy + Delta-G solvation = -12251.618494 eV Core-core repulsion = 10074.150121 eV Total energy + Delta-G solvation = -2177.468373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.91902 -34.96406 -32.23527 -32.14708 -29.34677 -26.85116 -25.25654 -24.46114 -19.90565 -19.25872 -17.09113 -15.19743 -15.01343 -14.46841 -14.22061 -13.86771 -12.92415 -12.48055 -12.30665 -11.99645 -11.52853 -11.48827 -11.11868 -11.01654 -10.85128 -10.49743 -10.44354 -10.28871 -9.93217 -9.33006 -8.82987 -8.53561 -7.97311 -6.27936 -4.35508 3.19335 3.27199 3.30740 4.25698 4.86409 5.00378 5.49979 5.54377 5.70969 5.98111 6.04092 6.18350 6.23021 6.23888 6.45764 6.52398 6.69129 6.73461 6.88560 7.01846 7.25356 7.43723 7.75367 7.89241 8.13304 8.68498 9.33372 9.52589 10.79854 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.061982 B = 0.013493 C = 0.012804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.632787 B = 2074.644667 C = 2186.241594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 C -0.137 4.137 4 C -0.130 4.130 5 C 0.229 3.771 6 O -0.584 6.584 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.037 3.963 16 O -0.386 6.386 17 H 0.052 0.948 18 H 0.058 0.942 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.382 0.618 26 H 0.269 0.731 27 H 0.092 0.908 28 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 4.702 0.419 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.168 4.168 5 C 0.189 3.811 6 O -0.393 6.393 7 C -0.575 4.575 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.537 5.537 11 Si 0.730 3.270 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.040 4.040 16 O -0.306 6.306 17 H 0.071 0.929 18 H 0.077 0.923 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.232 0.768 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.105 5.239 0.358 6.665 hybrid contribution -0.127 -1.662 0.348 1.703 sum -4.232 3.577 0.707 5.586 Atomic orbital electron populations 1.22232 0.96263 1.02107 1.01033 1.21970 0.92438 0.92810 0.87229 1.21847 1.01949 0.94824 1.00853 1.22957 0.99484 0.97743 0.96582 1.19975 0.79881 0.90821 0.90421 1.86107 1.19519 1.46029 1.87638 1.21620 1.33571 0.92053 1.10281 0.91769 1.25077 0.93979 0.99504 0.94813 1.69639 1.31743 1.26918 1.25443 0.86403 0.78126 0.82337 0.80143 1.20457 1.20959 1.19684 1.24316 0.99457 0.80700 0.99508 1.88826 1.86067 1.22945 1.32792 0.92905 0.92291 0.92437 0.92290 0.91893 0.92984 0.91432 0.90823 0.76754 0.92053 0.88960 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.60 37.16 0.32 -2.39 15 2 C 0.10 1.92 1.19 -90.04 -0.11 1.82 15 3 C -0.14 -2.37 8.67 37.16 0.32 -2.05 15 4 C -0.13 -2.88 5.61 -25.20 -0.14 -3.02 15 5 C 0.23 5.90 1.00 -89.76 -0.09 5.81 15 6 O -0.58 -15.83 13.14 -35.23 -0.46 -16.30 15 7 C -0.54 -14.52 8.24 -34.44 -0.28 -14.80 15 8 H 0.06 1.71 7.60 -52.49 -0.40 1.31 15 9 C 0.07 1.82 5.25 -17.82 -0.09 1.72 15 10 N -0.90 -24.09 10.68 55.43 0.59 -23.50 15 11 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 15 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 15 C 0.04 0.91 6.22 38.21 0.24 1.15 15 16 O -0.39 -9.10 10.88 -35.23 -0.38 -9.48 15 17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 18 H 0.06 1.05 8.13 -51.93 -0.42 0.63 15 19 H 0.06 0.84 8.14 -51.92 -0.42 0.42 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.07 1.47 7.64 -51.93 -0.40 1.07 15 24 H 0.07 1.55 7.26 -51.93 -0.38 1.17 15 25 H 0.38 10.42 7.20 45.56 0.33 10.74 15 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 27 H 0.09 2.43 7.60 -51.93 -0.39 2.03 15 28 H 0.05 1.20 8.03 -51.93 -0.42 0.79 15 LS Contribution 232.81 15.07 3.51 3.51 Total: -1.00 -28.07 232.81 -4.93 -33.00 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.33 Total: 9.01 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 0.16 Total: -11.76 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.59 Total: -23.50 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.85 Total: -25.78 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.07 -4.93 -33.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307686489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.543 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds