Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.86972 * 2 1 4 4 C 1.54103 * 109.87825 * 121.00270 * 2 1 3 5 5 C 1.54811 * 104.18319 * 117.39581 * 4 2 1 6 6 O 1.42902 * 110.90759 * 97.31947 * 5 4 2 7 7 C 1.50700 * 110.90303 * 220.88303 * 5 4 2 8 8 H 1.07997 * 120.00116 * 354.77098 * 7 5 4 9 9 C 1.37879 * 119.99485 * 174.76679 * 7 5 4 10 10 N 1.31509 * 120.00449 * 4.93533 * 9 7 5 11 11 Si 1.86809 * 119.99664 * 184.93616 * 9 7 5 12 12 H 1.48498 * 109.47168 * 94.99821 * 11 9 7 13 13 H 1.48498 * 109.47142 * 214.99848 * 11 9 7 14 14 H 1.48500 * 109.47127 * 334.99682 * 11 9 7 15 15 C 1.54996 * 102.09418 * 339.11893 * 5 4 2 16 16 O 1.43732 * 109.87841 * 238.99146 * 2 1 3 17 17 H 1.08996 * 109.47509 * 59.29927 * 1 2 3 18 18 H 1.09000 * 109.47355 * 179.30337 * 1 2 3 19 19 H 1.09008 * 109.47338 * 299.30131 * 1 2 3 20 20 H 1.09004 * 109.47550 * 60.69375 * 3 2 1 21 21 H 1.08996 * 109.47379 * 180.69878 * 3 2 1 22 22 H 1.09004 * 109.46817 * 300.70188 * 3 2 1 23 23 H 1.09001 * 110.48357 * 236.07448 * 4 2 1 24 24 H 1.08999 * 110.48690 * 358.72053 * 4 2 1 25 25 H 0.96693 * 113.99994 * 179.97438 * 6 5 4 26 26 H 0.96999 * 120.00130 * 180.02562 * 10 9 7 27 27 H 1.09000 * 110.61417 * 155.52932 * 15 5 4 28 28 H 1.08997 * 110.61689 * 278.36498 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7465 1.2422 5 6 2.8324 -1.9515 0.6603 6 8 4.2324 -1.6718 0.5973 7 6 2.5715 -3.1991 1.4643 8 1 1.9813 -3.1461 2.3672 9 6 3.0861 -4.4082 1.0470 10 7 3.8842 -4.4581 0.0029 11 14 2.6497 -5.9757 1.9648 12 1 1.5003 -6.6370 1.2964 13 1 3.8180 -6.8924 1.9623 14 1 2.2839 -5.6438 3.3652 15 6 2.2280 -2.0724 -0.7619 16 8 2.0187 -0.6963 -1.1585 17 1 -0.3634 0.5246 -0.8836 18 1 -0.3634 -1.0276 -0.0125 19 1 -0.3634 0.5030 0.8962 20 1 1.7005 1.9517 0.8961 21 1 3.1399 1.4314 -0.0125 22 1 1.6800 1.9589 -0.8837 23 1 2.7196 -0.1052 1.8200 24 1 1.2237 -1.0905 1.8589 25 1 4.7626 -2.3971 0.2398 26 1 4.2460 -5.3088 -0.2908 27 1 2.9295 -2.5632 -1.4365 28 1 1.2827 -2.6142 -0.7323 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307686489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -130.648945 kcal Electronic energy + Delta-G solvation = -12252.490496 eV Core-core repulsion = 10074.150121 eV Total energy + Delta-G solvation = -2178.340375 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.70795 -36.93668 -34.22707 -33.86959 -31.26100 -28.21106 -27.16151 -26.34858 -21.85142 -20.90026 -19.13158 -17.05361 -16.95673 -16.30353 -16.02944 -15.60059 -14.55467 -14.24274 -14.00287 -13.68574 -13.35172 -13.00218 -12.85518 -12.64624 -12.54684 -12.36942 -12.26768 -12.07177 -11.68923 -11.13818 -10.73684 -10.48679 -9.97352 -8.28781 -6.44856 1.40233 1.42274 1.52740 2.35560 2.96802 3.16306 3.84523 3.99984 4.14372 4.22375 4.42572 4.64488 4.78808 4.79839 4.88394 4.97098 5.02909 5.05231 5.21610 5.34969 5.44240 5.50668 5.72415 6.00195 6.21797 6.63481 7.26933 7.39744 8.78026 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.061982 B = 0.013493 C = 0.012804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.632787 B = 2074.644667 C = 2186.241594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.084 3.916 3 C -0.133 4.133 4 C -0.128 4.128 5 C 0.210 3.790 6 O -0.594 6.594 7 C -0.562 4.562 8 H 0.062 0.938 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.967 3.033 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.269 1.269 15 C 0.049 3.951 16 O -0.401 6.401 17 H 0.067 0.933 18 H 0.045 0.955 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.376 0.624 26 H 0.273 0.727 27 H 0.069 0.931 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 5.133 1.066 7.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 C -0.190 4.190 4 C -0.165 4.165 5 C 0.170 3.830 6 O -0.402 6.402 7 C -0.600 4.600 8 H 0.080 0.920 9 C -0.174 4.174 10 N -0.556 5.556 11 Si 0.791 3.209 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.194 1.194 15 C -0.028 4.028 16 O -0.321 6.321 17 H 0.086 0.914 18 H 0.064 0.936 19 H 0.105 0.895 20 H 0.108 0.892 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.226 0.774 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.237 5.690 1.005 7.798 hybrid contribution 0.244 -1.759 0.139 1.782 sum -4.993 3.931 1.143 6.456 Atomic orbital electron populations 1.22186 0.93561 1.02013 1.03275 1.22344 0.94603 0.93643 0.84956 1.21851 1.00801 0.93165 1.03224 1.22983 0.99311 0.96610 0.97615 1.20276 0.79329 0.92317 0.91051 1.86100 1.20574 1.45909 1.87656 1.21856 1.34317 0.93142 1.10676 0.91978 1.25832 0.93690 1.02341 0.95562 1.69728 1.31916 1.27718 1.26206 0.85410 0.77960 0.78530 0.78956 1.19811 1.20570 1.19364 1.23998 0.98501 0.81579 0.98680 1.88798 1.86604 1.22180 1.34549 0.91384 0.93568 0.89517 0.89222 0.93705 0.91356 0.91368 0.89906 0.77427 0.91787 0.91219 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.60 71.98 0.62 -4.16 15 2 C 0.08 3.22 1.19 -10.42 -0.01 3.21 15 3 C -0.13 -4.24 8.67 71.98 0.62 -3.62 15 4 C -0.13 -5.51 5.61 31.59 0.18 -5.34 15 5 C 0.21 10.86 1.00 -10.24 -0.01 10.85 15 6 O -0.59 -32.72 13.14 -148.98 -1.96 -34.68 15 7 C -0.56 -30.38 8.24 25.60 0.21 -30.17 15 8 H 0.06 3.29 7.60 -2.91 -0.02 3.27 15 9 C 0.03 1.39 5.25 84.66 0.44 1.83 15 10 N -0.92 -49.51 10.68 21.45 0.23 -49.28 15 11 Si 0.97 41.74 29.54 68.60 2.03 43.77 15 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 15 C 0.05 2.48 6.22 72.67 0.45 2.94 15 16 O -0.40 -18.68 10.88 -148.98 -1.62 -20.30 15 17 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 18 H 0.05 1.55 8.13 -2.39 -0.02 1.53 15 19 H 0.09 2.20 8.14 -2.38 -0.02 2.18 15 20 H 0.09 2.29 8.14 -2.38 -0.02 2.27 15 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.07 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.07 2.88 7.64 -2.39 -0.02 2.86 15 24 H 0.08 3.36 7.26 -2.39 -0.02 3.34 15 25 H 0.38 21.08 7.20 -74.06 -0.53 20.55 15 26 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 27 H 0.07 3.77 7.60 -2.39 -0.02 3.75 15 28 H 0.04 2.24 8.03 -2.39 -0.02 2.22 15 Total: -1.00 -58.86 232.81 1.79 -57.07 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.61 Total: 27.88 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 2.51 Total: -24.47 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.23 Total: -49.28 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -3.58 Total: -54.98 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -58.86 1.79 -57.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307686489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.579 kcal (2) G-P(sol) polarization free energy of solvation -58.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds