Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00429 * 2 1 4 4 H 1.48502 * 109.47041 * 270.00071 * 3 2 1 5 5 H 1.48504 * 109.46808 * 29.99943 * 3 2 1 6 6 H 1.48496 * 109.47294 * 150.00145 * 3 2 1 7 7 C 1.37885 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99446 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.46892 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46892 * 179.97438 * 11 10 9 13 13 H 1.09002 * 115.71924 * 29.41356 * 12 11 10 14 14 O 1.42901 * 117.77056 * 242.46869 * 12 11 10 15 15 C 1.42904 * 64.73322 * 253.10488 * 14 12 11 16 16 H 1.08993 * 117.77125 * 106.83958 * 15 14 12 17 17 C 1.52997 * 117.77082 * 253.15758 * 15 14 12 18 18 O 1.42897 * 109.47340 * 241.01645 * 17 15 14 19 19 H 0.97002 * 119.99798 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47008 * 60.00092 * 9 7 2 21 21 H 1.08996 * 109.47354 * 299.99722 * 9 7 2 22 22 H 1.08993 * 109.47657 * 60.00293 * 10 9 7 23 23 H 1.09004 * 109.47145 * 299.99786 * 10 9 7 24 24 H 1.08993 * 109.47034 * 59.99539 * 11 10 9 25 25 H 1.09004 * 109.46747 * 299.99657 * 11 10 9 26 26 H 1.08998 * 109.47000 * 1.01942 * 17 15 14 27 27 H 1.09007 * 109.47149 * 121.01457 * 17 15 14 28 28 H 0.96701 * 114.00367 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4744 -6.1501 0.0037 13 1 3.4320 -5.9535 0.4858 14 8 2.4628 -7.0364 -1.1172 15 6 1.9117 -7.5704 0.0883 16 1 0.8294 -7.6853 0.1447 17 6 2.7316 -8.6181 0.8440 18 8 1.9945 -9.8403 0.9135 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8718 -3.6037 0.8926 23 1 2.8718 -3.6052 -0.8873 24 1 0.8537 -5.0454 -0.8868 25 1 0.8532 -5.0443 0.8932 26 1 3.6721 -8.7902 0.3206 27 1 2.9375 -8.2600 1.8528 28 1 2.4547 -10.5511 1.3806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383822461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -83.340689 kcal Electronic energy + Delta-G solvation = -10857.307565 eV Core-core repulsion = 8681.018630 eV Total energy + Delta-G solvation = -2176.288935 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.40793 -36.76980 -34.46726 -32.16309 -28.92323 -28.15872 -24.57698 -22.32625 -21.01682 -20.12265 -17.68355 -16.36321 -15.97757 -15.62731 -14.90674 -14.47817 -14.29077 -13.57235 -13.04271 -12.35084 -12.10020 -11.51479 -11.36574 -10.89895 -10.69668 -10.63089 -10.49896 -10.16715 -9.93479 -9.63410 -9.25163 -9.00326 -8.33791 -5.98838 -4.01175 3.32795 3.33142 3.38860 3.42204 3.96212 4.41055 4.47329 4.84670 4.92539 5.02362 5.27371 5.36822 5.39413 5.55910 5.85766 5.93451 6.22717 6.38736 6.73476 6.85901 7.12107 7.34506 7.68704 7.83347 8.01354 8.43941 9.06017 9.62780 11.12571 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.114542 B = 0.005813 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 244.393491 B = 4815.483336 C = 4892.400777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.015 3.985 13 H 0.123 0.877 14 O -0.355 6.355 15 C -0.023 4.023 16 H 0.129 0.871 17 C 0.091 3.909 18 O -0.570 6.570 19 H 0.260 0.740 20 H 0.016 0.984 21 H 0.017 0.983 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -14.120 3.706 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.148 4.148 12 C -0.042 4.042 13 H 0.140 0.860 14 O -0.275 6.275 15 C -0.081 4.081 16 H 0.146 0.854 17 C 0.013 3.987 18 O -0.376 6.376 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.035 0.965 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.427 -13.694 3.022 14.706 hybrid contribution 0.906 0.603 0.106 1.094 sum 5.333 -13.092 3.128 14.478 Atomic orbital electron populations 1.69965 1.06062 1.26581 1.50925 1.25037 0.94858 0.99277 0.95369 0.86593 0.79824 0.83474 0.78099 1.20682 1.21222 1.19890 1.21271 0.93048 0.91128 1.50484 0.92692 1.19107 0.94024 0.91304 0.97306 1.21638 0.99184 0.93273 1.00520 1.21695 0.96931 0.93144 1.03031 1.24223 1.01246 0.87640 0.91045 0.85973 1.91688 1.82189 1.34515 1.19101 1.23524 0.99230 0.93923 0.91391 0.85382 1.21980 0.93481 0.84269 0.98998 1.86467 1.47641 1.22716 1.80806 0.93009 0.96561 0.96483 0.93061 0.93179 0.91070 0.90316 0.92642 0.91560 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 15 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 15 10 C -0.11 -2.22 5.12 -26.73 -0.14 -2.36 15 11 C -0.11 -1.88 5.63 -26.73 -0.15 -2.03 15 12 C 0.02 0.23 6.34 -26.73 -0.17 0.06 15 13 H 0.12 1.56 8.08 -51.93 -0.42 1.14 15 14 O -0.35 -6.09 14.42 -35.23 -0.51 -6.60 15 15 C -0.02 -0.32 6.67 -26.73 -0.18 -0.50 15 16 H 0.13 1.71 8.14 -51.93 -0.42 1.29 15 17 C 0.09 0.94 7.46 37.16 0.28 1.22 15 18 O -0.57 -5.92 13.66 -35.23 -0.48 -6.40 15 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 20 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 21 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 1.28 8.13 -51.93 -0.42 0.86 15 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 15 27 H 0.07 0.54 8.14 -51.92 -0.42 0.12 15 28 H 0.38 1.91 9.12 45.56 0.42 2.33 15 LS Contribution 249.49 15.07 3.76 3.76 Total: -1.00 -32.99 249.49 -5.77 -38.76 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -3.35 Total: -2.88 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.91 Total: -16.97 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.99 Total: -12.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.99 -5.77 -38.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383822461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.583 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds