Wall clock time and date at job start Mon Mar 30 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48492 * 109.47387 * 269.99556 * 3 2 1 5 5 H 1.48497 * 109.47452 * 30.00455 * 3 2 1 6 6 H 1.48508 * 109.46866 * 149.99811 * 3 2 1 7 7 C 1.37875 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00519 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99727 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47335 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47179 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46811 * 180.02562 * 11 10 9 13 13 H 1.08995 * 115.71432 * 331.94525 * 12 11 10 14 14 O 1.42906 * 117.77073 * 118.98450 * 12 11 10 15 15 C 1.42902 * 64.73021 * 106.83642 * 14 12 11 16 16 H 1.08995 * 117.81741 * 253.17414 * 15 14 12 17 17 C 1.53003 * 117.76888 * 106.84200 * 15 14 12 18 18 O 1.42898 * 109.47066 * 118.98049 * 17 15 14 19 19 H 0.97000 * 119.99627 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 59.99758 * 9 7 2 21 21 H 1.09001 * 109.47280 * 300.00361 * 9 7 2 22 22 H 1.09009 * 109.47102 * 60.00022 * 10 9 7 23 23 H 1.09001 * 109.47165 * 300.00351 * 10 9 7 24 24 H 1.08992 * 109.47188 * 60.00272 * 11 10 9 25 25 H 1.08997 * 109.46828 * 299.99992 * 11 10 9 26 26 H 1.08999 * 109.46773 * 238.97907 * 17 15 14 27 27 H 1.09001 * 109.46921 * 358.97801 * 17 15 14 28 28 H 0.96701 * 114.00199 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0791 0.0015 13 1 5.4018 -4.8141 0.4622 14 8 6.8621 -4.5017 -1.1043 15 6 7.5706 -4.3017 0.1205 16 1 8.2090 -3.4220 0.2009 17 6 8.0507 -5.5419 0.8770 18 8 9.4756 -5.5144 0.9810 19 1 -0.4849 0.8401 -0.0004 20 1 3.8746 -0.6800 0.8911 21 1 3.8753 -0.6804 -0.8888 22 1 3.6586 -3.1502 -0.8893 23 1 3.6579 -3.1506 0.8907 24 1 5.9142 -2.1231 0.8927 25 1 5.9156 -2.1223 -0.8873 26 1 7.6136 -5.5503 1.8754 27 1 7.7430 -6.4380 0.3380 28 1 9.8505 -6.2721 1.4505 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388107545.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:38 Heat of formation + Delta-G solvation = -79.685519 kcal Electronic energy + Delta-G solvation = -10897.301867 eV Core-core repulsion = 8721.171432 eV Total energy + Delta-G solvation = -2176.130435 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.47871 -36.81243 -34.61306 -32.19226 -29.10283 -28.55657 -24.65735 -22.20327 -21.06053 -20.08659 -17.72703 -16.74306 -16.06430 -15.70340 -15.03565 -14.49887 -14.10185 -13.72109 -13.04714 -12.71807 -12.20628 -11.76638 -11.53331 -11.06804 -10.84802 -10.63745 -10.31682 -10.10447 -9.86255 -9.70414 -9.39784 -9.15953 -8.52750 -6.03350 -4.01354 3.26599 3.32071 3.39168 3.42730 3.90690 4.34252 4.46340 4.78311 4.87063 4.97326 5.20405 5.30280 5.32111 5.46864 5.77642 5.80370 6.10290 6.24734 6.57113 6.64977 6.90180 7.30428 7.30563 7.43829 7.80570 8.55056 9.01615 9.59271 11.10178 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.088829 B = 0.006383 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.136264 B = 4385.835822 C = 4533.141606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.101 4.101 11 C -0.113 4.113 12 C 0.015 3.985 13 H 0.125 0.875 14 O -0.354 6.354 15 C -0.023 4.023 16 H 0.128 0.872 17 C 0.090 3.910 18 O -0.571 6.571 19 H 0.263 0.737 20 H 0.016 0.984 21 H 0.011 0.989 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.950 -8.606 3.749 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.138 4.138 11 C -0.151 4.151 12 C -0.042 4.042 13 H 0.142 0.858 14 O -0.274 6.274 15 C -0.080 4.080 16 H 0.146 0.854 17 C 0.012 3.988 18 O -0.377 6.377 19 H 0.072 0.928 20 H 0.035 0.965 21 H 0.030 0.970 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 14.718 -8.023 3.066 17.041 hybrid contribution 0.368 0.307 0.088 0.487 sum 15.087 -7.716 3.154 17.237 Atomic orbital electron populations 1.69925 1.06315 1.26863 1.51286 1.25053 0.94754 0.99238 0.94591 0.86752 0.80328 0.83539 0.78506 1.20330 1.21417 1.18983 1.21165 0.89577 0.94468 1.50680 0.91054 1.19584 0.97138 0.92239 0.96299 1.21464 0.90796 1.00193 1.01388 1.21721 0.98894 0.91505 1.02958 1.24180 0.89258 0.99355 0.91402 0.85773 1.91696 1.28782 1.88378 1.18532 1.23527 0.94301 0.99298 0.90859 0.85417 1.21984 0.81427 0.96386 0.98980 1.86461 1.20177 1.50130 1.80903 0.92767 0.96523 0.97041 0.92554 0.92424 0.90341 0.91065 0.91515 0.92568 0.76993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 15 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 15 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 15 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 15 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 15 10 C -0.10 -1.96 5.11 -26.73 -0.14 -2.10 15 11 C -0.11 -1.79 5.63 -26.73 -0.15 -1.94 15 12 C 0.01 0.21 6.35 -26.73 -0.17 0.04 15 13 H 0.12 1.52 8.07 -51.93 -0.42 1.10 15 14 O -0.35 -5.83 14.42 -35.23 -0.51 -6.34 15 15 C -0.02 -0.29 6.67 -26.73 -0.18 -0.47 15 16 H 0.13 1.60 8.14 -51.93 -0.42 1.18 15 17 C 0.09 0.90 7.46 37.16 0.28 1.17 15 18 O -0.57 -5.68 13.66 -35.23 -0.48 -6.16 15 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.02 0.39 7.20 -51.93 -0.37 0.02 15 21 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 15 22 H 0.06 1.13 8.14 -51.92 -0.42 0.71 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.07 1.18 8.13 -51.93 -0.42 0.75 15 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 15 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 15 28 H 0.38 1.78 9.12 45.56 0.42 2.20 15 LS Contribution 245.87 15.07 3.71 3.71 Total: -1.00 -33.42 245.87 -5.40 -38.82 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.31 Total: -2.53 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.90 Total: -17.33 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.99 Total: -12.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.42 -5.40 -38.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388107545.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.866 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds