Wall clock time and date at job start Mon Mar 30 2020 02:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48492 * 109.47387 * 269.99556 * 3 2 1 5 5 H 1.48497 * 109.47452 * 30.00455 * 3 2 1 6 6 H 1.48508 * 109.46866 * 149.99811 * 3 2 1 7 7 C 1.37875 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00519 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99727 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47335 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47179 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46811 * 180.02562 * 11 10 9 13 13 H 1.08995 * 115.71432 * 331.94525 * 12 11 10 14 14 O 1.42906 * 117.77073 * 118.98450 * 12 11 10 15 15 C 1.42902 * 64.73021 * 106.83642 * 14 12 11 16 16 H 1.08995 * 117.81741 * 253.17414 * 15 14 12 17 17 C 1.53003 * 117.76888 * 106.84200 * 15 14 12 18 18 O 1.42898 * 109.47066 * 118.98049 * 17 15 14 19 19 H 0.97000 * 119.99627 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 59.99758 * 9 7 2 21 21 H 1.09001 * 109.47280 * 300.00361 * 9 7 2 22 22 H 1.09009 * 109.47102 * 60.00022 * 10 9 7 23 23 H 1.09001 * 109.47165 * 300.00351 * 10 9 7 24 24 H 1.08992 * 109.47188 * 60.00272 * 11 10 9 25 25 H 1.08997 * 109.46828 * 299.99992 * 11 10 9 26 26 H 1.08999 * 109.46773 * 238.97907 * 17 15 14 27 27 H 1.09001 * 109.46921 * 358.97801 * 17 15 14 28 28 H 0.96701 * 114.00199 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0791 0.0015 13 1 5.4018 -4.8141 0.4622 14 8 6.8621 -4.5017 -1.1043 15 6 7.5706 -4.3017 0.1205 16 1 8.2090 -3.4220 0.2009 17 6 8.0507 -5.5419 0.8770 18 8 9.4756 -5.5144 0.9810 19 1 -0.4849 0.8401 -0.0004 20 1 3.8746 -0.6800 0.8911 21 1 3.8753 -0.6804 -0.8888 22 1 3.6586 -3.1502 -0.8893 23 1 3.6579 -3.1506 0.8907 24 1 5.9142 -2.1231 0.8927 25 1 5.9156 -2.1223 -0.8873 26 1 7.6136 -5.5503 1.8754 27 1 7.7430 -6.4380 0.3380 28 1 9.8505 -6.2721 1.4505 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388107545.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:37 Heat of formation + Delta-G solvation = -106.250800 kcal Electronic energy + Delta-G solvation = -10898.453824 eV Core-core repulsion = 8721.171432 eV Total energy + Delta-G solvation = -2177.282392 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.56158 -37.54060 -36.35165 -34.23693 -30.65292 -29.64429 -26.29258 -23.53829 -22.14533 -21.78830 -18.92687 -18.43299 -17.16701 -16.72059 -16.35862 -16.04189 -15.61133 -14.85426 -14.74866 -14.01605 -13.88811 -13.38856 -12.89562 -12.67496 -12.41243 -11.87645 -11.76439 -11.52392 -11.36332 -11.25126 -11.20109 -10.75906 -10.64735 -8.29054 -6.33331 1.37368 1.38645 1.51083 2.29051 2.37189 3.02195 3.06469 3.36718 3.92581 3.97091 4.03936 4.22642 4.27925 4.39178 4.63708 4.69152 4.82346 4.94088 5.06237 5.12952 5.18277 5.54678 5.63048 5.68000 6.29297 6.75194 6.86493 7.31489 8.87857 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.088829 B = 0.006383 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.136264 B = 4385.835822 C = 4533.141606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.104 4.104 12 C 0.012 3.988 13 H 0.143 0.857 14 O -0.392 6.392 15 C -0.014 4.014 16 H 0.130 0.870 17 C 0.093 3.907 18 O -0.590 6.590 19 H 0.266 0.734 20 H 0.028 0.972 21 H 0.014 0.986 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 -8.280 4.636 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.141 4.141 12 C -0.044 4.044 13 H 0.160 0.840 14 O -0.313 6.313 15 C -0.070 4.070 16 H 0.147 0.853 17 C 0.015 3.985 18 O -0.400 6.400 19 H 0.075 0.925 20 H 0.046 0.954 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 16.956 -7.731 3.967 19.053 hybrid contribution -0.352 0.121 -0.186 0.416 sum 16.605 -7.610 3.781 18.653 Atomic orbital electron populations 1.70084 1.08386 1.28169 1.52812 1.26091 0.95675 1.03764 0.94131 0.85601 0.79667 0.77955 0.79078 1.19563 1.20925 1.16458 1.21566 0.92410 0.93090 1.50257 0.95085 1.19567 0.93687 0.95291 0.96685 1.21327 0.93621 0.97270 1.01012 1.21568 0.95774 0.93198 1.03590 1.24140 0.90588 0.98586 0.91086 0.83973 1.91673 1.30555 1.88598 1.20498 1.23882 0.93287 1.00865 0.89012 0.85276 1.21991 0.81718 0.94839 0.99947 1.86395 1.20146 1.51844 1.81617 0.92530 0.95379 0.96781 0.94079 0.91824 0.88272 0.91894 0.88700 0.92299 0.74372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.39 15 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 15 3 Si 0.95 44.57 27.47 68.60 1.88 46.46 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 15 7 C -0.54 -31.33 9.66 25.60 0.25 -31.08 15 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 15 9 C -0.01 -0.70 4.04 29.85 0.12 -0.58 15 10 C -0.09 -3.59 5.11 30.59 0.16 -3.44 15 11 C -0.10 -3.07 5.63 30.60 0.17 -2.90 15 12 C 0.01 0.32 6.35 30.60 0.19 0.52 15 13 H 0.14 3.13 8.07 -2.39 -0.02 3.12 15 14 O -0.39 -12.42 14.42 -148.98 -2.15 -14.57 15 15 C -0.01 -0.32 6.67 30.59 0.20 -0.12 15 16 H 0.13 2.94 8.14 -2.39 -0.02 2.92 15 17 C 0.09 1.57 7.46 71.98 0.54 2.10 15 18 O -0.59 -10.08 13.66 -148.98 -2.03 -12.11 15 19 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 20 H 0.03 1.24 7.20 -2.39 -0.02 1.23 15 21 H 0.01 0.64 7.57 -2.39 -0.02 0.62 15 22 H 0.04 1.65 8.14 -2.38 -0.02 1.63 15 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.06 1.97 8.13 -2.39 -0.02 1.95 15 26 H 0.10 1.09 8.14 -2.39 -0.02 1.07 15 27 H 0.06 0.97 8.13 -2.39 -0.02 0.95 15 28 H 0.40 2.58 9.12 -74.06 -0.68 1.90 15 Total: -1.00 -72.46 245.87 0.50 -71.96 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.40 Total: 3.70 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 2.09 Total: -35.04 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.30 Total: -60.39 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -4.18 Total: -26.68 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -72.46 0.50 -71.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388107545.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.287 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds